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ADAMS, N. S., J. W. BEEMAN, and J. H. EILER (editors).
  2012. Telemetry techniques: a user guide for fisheries research. Am. Fish. Soc., Bethesda, MD. 518 p.

ALLEN, B. M., and R. P. ANGLISS.
  2012. Alaska marine mammal stock assessments, 2011. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-234, 288 p.  Online. (.pdf, 13.7 MB).

ALTUKHOV, A. V., P. A. PERMYAKOV, R. D. ANDREWS, V. N. BURKANOV, D. G. CALKINS, A. M. TRUKHIN, and T. S. GELATT.
  2012. Adult Steller sea lion mortality on rookeries in the Russian Far East, 2002-2010. Russ. J. Mar. Biol. 38:442-447.

BARTOLINO, V., L. CIANNELLI, P. SPENCER, T. K. WILDERBUER, and K-S. CHAN.
  2012. Scale-dependent depletion of natural populations. Mar. Ecol. Prog. Ser. 444:251-261.  Online. (.pdf, 1.2 MB).

BJORKSTEDT, E. P., R. GOERICKE, S. McCLATCHIE, E. WEBER, W. WATSON, N. LO, W. T. PETERSON, R. D. BRODEUR, T. AUTH, J. FISHER, C. MORGAN, J. PETERSON, J. LARGIER, S. J. BOGRAD, R. DURAZO, G. GAXIOLA-CASTRO, B. LAVANIEGOS, F. P. CHAVEZ, C. A. COLLINS, B. HANNAH, J. FIELD, K. SAKUMA, W. SATTERTHWAITE, M. O'FARRELL, S. HAYES, J. HARDING, W. J. SYDEMAN, S. A. THOMPSON, P. WARZYBOK, R. BRADLEY, J. JAHNCKE, R. T. GOLIGHTLY, S. R. SCHNEIDER, R. M. SURYAN, A. J. GLADICS, C. A. HORTON, S. Y. KIM, S. R. MELIN, R. L. DELONG, and J. ABELL.
  2012. State of the California Current 2011-2012: Ecosystems respond to local forcing as La Niña wavers and wanes. Cal. Coop. Oceanic Fish. Invest. Rep. 53:41-76.

BOLDT, J. L., S. C. BARTKIW, P. A. LIVINGSTON, G. R. HOFF, and G. E. WALTERS.
  2012. Investigation of fishing and climate effects on the community size spectra of eastern Bering Sea fish. Trans. Am. Fish. Soc. 141:327-342.

BOLDT, J. L., T. W. BUCKLEY, C. N. ROOPER, and K. AYDIN.
  2012. Factors influencing cannibalism and abundance of walleye pollock (Theragra chalcogramma) on the eastern Bering Sea shelf, 1982-2006. Fish. Bull., U.S. 110:293-306.  Online. (.pdf, 2.37 MB).

BROOKE, S. G., L. L. DESFOSSE, and W. A. KARP.
  2012. Estimating overall fish bycatch in U.S. commercial fisheries. Mar. Fish. Rev. 74(3):1-5.  Online. (.pdf, 720 KB).

BURNS, J., H. ADERMAN, T. ASKOAK, and D. WITHROW.
  2012. Local and scientific knowledge of freshwater seals in Iliamna Lake, Alaska, p. 211-227. In C. Carother, K. R. Criddle, C. P. Chambers, P. J. Cullenberg, J. A. Fall, A. H. Himes-Cornell, J. P. Johnsen, N. S. Kimball, C. R. Menzies, and E. S. Springer (editors), Fishing People of the North: Cultures, Economies, and Management Responding to Change. Alaska Sea Grant, University of Alaska, Fairbanks, Fairbanks, AK.

CALL, K. A., and R. R. REAM.
  2012. Prey selection of subadult male northern fur seals (Callorhinus ursinus) and evidence of dietary niche overlap with adult females during the breeding season. Marine Mammal Sci. 28(1):1-15.

CASTELLINI, J. M., L. D. REA, C. L. LIESKE, K. B. BECKMEN, B. S. FADELY, J. M. MANISCALCO, and T. M. O'HARA.
  2012. Mercury concentrations in hair from neonatal and juvenile Steller sea lions (Eumetopias jubatus): Implications based on age and region in this northern Pacific marine sentinel piscivore. EcoHealth 9(3):267-277.

CASTELLOTE, M., C. W. CLARK, and M. O. LAMMERS.
  2012. Acoustic compensation to shipping and air gun noise by Mediterranean fin whales (Balaenoptera physalus), p. 321-321. In A. N. Popper and A. Hawkins (editors), Effects of Noise on Aquatic Life. Springer, New York.

CHILTON, E. A., C. E. ARMISTEAD, and R. J. FOY.
  2012. The 2011 Eastern Bering Sea continental shelf bottom trawl survey: Results for commercial crab species, 118 p. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-235, 118 p.  Online. (.pdf, 4.19 MB)

CHOI, J. H., and D. A. SOMERTON.
  2012. Efficiency of the Korean bottom survey trawl for snow crab Chionoecetes opilio. Fish. Aquat. Sci. 15(4):1-7.

CHURNSIDE, J. H., E. D. BROWN, S. PARKER-STETTER, J. K. HORNE, G. L. HUNT, Jr., N. HILLGRUBER, M. F. SIGLER, and J. J. VOLLENWEIDER.
  2012. Airborne remote sensing of a biological hot spot in the southeastern Bering Sea. Remote Sens. 3:621-637.

CLARKE, J. T., C. L. CHRISTMAN, A. A. BROWER, and M. C. FERGUSON.
  2012. Distribution and relative abundance of marine mammals in the Alaskan Chukchi and Beaufort seas, 2011. Annual Report, OCS Study BOEM 2012-009. Natl. Mar. Mammal Lab., Alaska Fish. Sci. Cent., NMFS, NOAA, 7600 Sand Point Way NE, F/AKC3, Seattle, WA 98115-6349.  Online. (.pdf, 34.24 MB).

CONN, P. B., D. S. JOHNSON, J. M. LONDON, and P. L. BOVENG.
  2012. Accounting for missing data when assessing availability in animal population surveys: an application to ice-associated seals in the Bering Sea. Methods Ecol. Evol. 3:1039–1046.

CONN, P. B., J. L. LAAKE, and D. S. JOHNSON.
  2012. A hierarchical modeling framework for multiple observer transect surveys. PLoS ONE 7(8): e42294.  Online. (.pdf, 576 KB).

CONSTANTINE, R., J. A. JACKSON, D. STEEL, C. S. BAKER, L. BROOKS, D. BURNS, P. CLAPHAM, N. HAUSER, B. MADON, D. MATTILA, M. OREMUS, M. POOLE, J. ROBBINS, K. THOMPSON, and C. GARRIGUE.
  2012. Abundance of humpback whales in Oceania using photo-identification and microsatellite genotyping. Mar. Ecol. Prog. Ser. 453:249-261.  Online. (.pdf, 321 KB).

De ROBERTIS, A., C. WILSON, and N. J. WILLAMSON.
  2012. Do silent ships see more fish? Comparison of a noise-reduced and a conventional research vessel in Alaska, p. 331-334. In A. N. Popper, and A. Hawkins (editors), The Effects of Noise on Aquatic Life, Advances in Experimental Medicine and Biology Vol. 730.

De ROBERTIS, A., and E. D. COKELET.
  2012. Distribution of fish and macrozooplankton in ice-covered and open-water areas of the eastern Bering Sea. Deep-Sea Res. II 65-70:217-229.

DESFOSSE, L. L., W. A. KARP, and S. G. BROOKE.
  2012. Evaluating the quality of bycatch data and bycatch estimates among disparate fisheries. Mar. Fish. Rev. 74(3):6-13.  Online. (.pdf, 979 KB).

DONEY, S. C., M. RUCKELSHAUS, J. E. DUFFY, J. P. BARRY, F. CHAN, C. A. ENGLISH, H. M.GALINDO, J. M. GREBMEIER, A. B. HOLLOWED, N. KNOWLTON, J. POLOVINA, N. N. RABALAIS, W. J. SYDEMAN, and L. D. TALLEY.
  2012. Climate change impacts on marine ecosystems, Annu. Rev. Mar. Sci. 4:11-37.

DOUGHERTY, A., K. BAILEY, T. VANCE, and W. CHENG.
  2012. Underlying causes of habitat-associated differences in size of age-0 walleye pollock (Theragra chalcogramma) in the Gulf of Alaska. Mar. Biol. 159:1733-1744.

DOYLE, M. J., and K. L. MIER.
  2012. A new conceptual framework for evaluating the early ontogeny phase of recruitment processes among marine fish species. Can. J. Fish. Aquat. Sci. 69:2112-2129.

EBERHARDT, L. L., and J. M. BREIWICK.
  2012. Models for population growth curves. ISRN Ecology 2012, Article ID 815016. 7 p.  Online. (.pdf, 537 KB).

ECHAVE, K., M. EAGLETON, E. FARLEY, and J. ORSI.
  2012. A refined description of essential fish habitat for Pacific salmon within the U.S. Exclusive Economic Zone in Alaska. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-236, 104 p.  Online. (.pdf, 4.51 MB).

ECHAVE, K. B., D. H. HANSELMAN, M. D. ADKISON, and M. F. SIGLER.
  2012. Interdecadal change in growth of sablefish (Anoplopoma fimbria) in the northeast Pacific Ocean. Fish. Bull., U.S. 210:361-374.  Online. (.pdf, 814 KB).

EILER, J. H.
  2012. Tracking aquatic animals with radio telemetry, p. 163-204. In N. S. Adams, J. W. Beeman, and J. H. Eiler (editors), Telemetry Techniques: a User Guide for Fisheries Research. Am. Fish. Soc., Bethesda, MD.

FEARNBACH, H., J. W. DURBAN, S. A. MIZROCH, S. BARBEAUX, and P. R. WADE.
  2012. Winter observations of a group of female and immature sperm whales in the high-latitude waters near the Aleutian Islands, Alaska. Mar. Biodiversity Rec. Vol. 5, e13, 4 p.

FEARNBACH, H., J. DURBAN, K. PARSONS, and D. CLARIDGE.
  2012. Photographic mark-recapture analysis of local dynamics within an open population of dolphins. Ecol. Appl. 22:1689-1700.

FORCADA, J., P. N. TRATHAN, P. L. BOVENG, I. L. BOYD, J. M. BURNS, D. P. COSTA, M. FEDAK, T. L. ROGERS, and C. J. SOUTHWELL.
  2012. Responses of Antarctic pack-ice seals to environmental change and increasing krill fishing. Biol. Conserv. 149:40-50.

FOSTER, E. A., D. W. FRANKS, L. J. MORRELL, K. C. BALCOMB, K. M. PARSONS, A. van GINNEKEN, and D. P. CROFT.
  2012. Social network correlates of food availability in an endangered population of killer whales, Orcinus orca. Anim. Behav. 83(3):731-736.

FOURNIER, D. A., H. J. SKAUG, J. ANCHETA, J. IANELLI, A. MAGNUSSON, M. N. MAUNDER, A. NIELSEN, and J. SIBERT.
  2012. AD Model Builder: Using automatic differentiation for statistical inference of highly parameterized complex nonlinear models. Optim. Methods Softw. 27:233-249.

FRIDAY, N. A., J. M. WAITE, A. N. ZERBINI, and S. E. MOORE.
  2012. Cetacean distribution and abundance in relation to oceanographic domains on the eastern Bering Sea shelf: 1999-2004. Deep-Sea Res. II 65-70:260-272.

GAICHAS, S., R. GAMBLE, M. FOGARTY, H. BENOÎT, T. ESSINGTON, C. FU, M. KOEN-ALONSO, and J. LINK.
  2012. Assembly rules for aggregate-species production models: Simulations in support of management strategy evaluation. Mar. Ecol. Prog. Ser. 459:275-292.  Online. (.pdf, 419 KB).

GAICHAS, S. K., G. ODELL, K. Y. AYDIN, and R. C. FRANCIS.
  2012. Beyond the defaults: Functional response parameter space and ecosystem-level fishing thresholds in dynamic food web model simulations. Can. J. Fish. Aquat. Sci. 69:2077–2094.

GARLAND, E. C., M. S. LILLEY, A. W. GOLDIZEN, M. L. REKDAHL, C. GARRIGUE, and M. J. NOAD.
  2012. Improved versions of the Levenshtein distance method for comparing sequence information in animals' vocalisations: Tests using humpback whale song. Behaviour 149:1413-1441.

GHARRETT, A. J, R. J. RILEY, and P. SPENCER.
  2012. Genetic structure of northern rockfish along the shelf break of the Gulf of Alaska and Aleutian Islands. Trans. Am. Fish. Soc. 141:370-382.

GOETZ, K. T., R. A. MONTGOMERY, J. M. Ver HOEF, R. C. HOBBS, and D. S. JOHNSON.
  2012. Identifying essential summer habitat of the endangered beluga whale Delphinapterus leucas in Cook Inlet, Alaska. Endang. Species Res. 16:135–147.  Online. (.pdf, 1.53 MB).

GREGG, J. L., J. J. VOLLENWEIDER, C. A. GRADY, R. A. HEINTZ, and P. K. HERSHBERGER.
  2012. Effects of environmental temperature on the dynamics of ichthyophoniasis in juvenile Pacific herring (Clupea pallasii). J. Parasitol. Res. Vol. 2011, Article ID 563412, 9 p.  Online. (.pdf, 1.05 MB).

GUSTAFSON, R. G., M. J. FORD, P. B. ADAMS, J. S. DRAKE, R. L. EMMETT, K. L. FRESH, M. ROWSE, E. A. K. SPANGLER, R. E. SPANGLER, D. J. TEEL, and M. T. WILSON.
  2012. Conservation status of eulachon in the California Current. Fish Fish. 13:121-138.

GUTHRIE, C. M. III, H. T. NGUYEN, and J. R. GUYON.
  2012. Genetic stock composition analysis of Chinook salmon bycatch samples from the 2010 Bering Sea trawl fisheries. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-232, 22 p.  Online. (.pdf, 673 KB).

HANSELMAN, D. H., W. G. CLARK, J. HEIFETZ, and D. M. ANDERL.
  2012. Statistical distribution of age readings of known-age sablefish (Anoplopoma fimbria). Fish. Res. 131-133:1-8.

HANSELMAN, D. H., P. D. SPENCER, D. R. McKELVEY, and M. H. MARTIN.
  2012. Application of an acoustic-trawl survey design to improve estimates of rockfish biomass. Fish. Bull., U.S. 110:379-396.

HARRIS, P. M., A. D. NEFF, and S. W. JOHNSON.
  2012. Changes in eelgrass habitat and faunal assemblages associated with coastal development in Juneau, Alaska, 47 p. U.S. Dep. Commer., NOAA Tech. Mmeo. NMFS-AFSC-240, 47 p.  Online. (.pdf, 4.17 MB).

HEARD, W. R.
  2012. Overview of salmon stock enhancement in southeast Alaska and compatibility with maintenance of hatchery and wild stocks. Environ. Biol. Fishes 94:273-283.

HELSER, T. E., and L. ALADE.
  2012. A retrospective of the hake stocks off the Atlantic and Pacific coasts of the United States: Uncertainties and challenges facing assessment and management in a complex environment. Fish. Res. 114:2-18.

HELSER, T. E., H-L. LAI, and B. A. BLACK.
  2012. Bayesian hierarchical modeling of Pacific geoduck growth increment data and climate indices. Ecol. Model. 247:210-220.

HIGGS, M. D., and J. M. Ver HOEF.
  2012. Discretized and aggregated: Modeling dive depth of harbor seals from ordered categorical data with temporal autocorrelation. Biometrics 68:965-974.

HIRUKI-RARING, L. M., J. M. Ver HOEF, P. L. BOVENG, and J. L. BENGTSON.
  2012. A Bayesian hierarchical model of Antarctic fur seal foraging and pup growth related to sea ice and prey abundance. Ecol. Appl. 22:668-684.

HOLLOWED, A. B., S. J. BARBEAUX, E. D. COKELET, S. KOTWICKI, P. H. RESSLER, C. SPITAL, and C. D. WILSON.
  2012. Effects of climate variations on pelagic ocean habitats and their role in structuring forage fish distributions in the Bering Sea. Deep-Sea Res. II 65-70:230-250.

HOLLOWED, A. B., and M. F. SIGLER.
  2012. Fish and Fisheries in the Chukchi and Beaufort Seas: Projected Impacts of Climate Change. NOAA's Arctic Report Card: Update for 2012.  Online. (web page).

HOLSMAN, K. K., T. ESSINGTON, T. J. MILLER, M. KOEN-ALONSO, and W. J. STOCKHAUSEN.
  2012. Comparative analysis of cod and herring production dynamics across 13 northern hemisphere marine ecosystems. Mar. Ecol. Prog. Ser. 459:231-246.  Online. (.pdf, 1.67 MB).

HULSON, P-J., D. H. HANSELMAN, and T. J. QUINN II.
  2012. Determining effective sample size in integrating age-structured assessment models. ICES J. Mar. Sci. 69:281-292.

HURST, T. P., E. R. FERNANDEZ, J. T. MATHIS, J. A. MILLER, C. M. STINSON, and E. F. AHGEAK.
  2012. Resiliency of juvenile walleye pollock to projected levels of ocean acidification. Aquat. Biol. 17:247-259.

HURST, T. P., J. H. MOSS, and J. A. MILLER.
  2012. Distributional patterns of 0-group Pacific cod (Gadus macrocephalus) in the eastern Bering Sea under variable recruitment and thermal conditions. ICES J. Mar. Sci. 69:163-174.

HURST, T., S. MUNCH, and K. LAVELLE.
  2012. Thermal reaction norms for growth vary among cohorts of Pacific cod (Gadus macrocephalus). Mar. Biol. 159:2173-2183.

IVASHCHENKO, Y. V., and P. J. CLAPHAM.
  2012. Soviet catches of right whales Eubalaena japonica and bowhead whales Balaena mysticetus in the North Pacific Ocean and the Okhotsk Sea. Endang. Species Res. 18:201–217.

JENSEN, P. C., and P. BENTZEN.
  2012. A molecular dissection of the mating system of the Dungeness crab, Metacarcinus magister (Brachyura: Cancridae). J. Crustac. Biol. 32(3):443-456.

JENSEN, P. C., M. K. PURCELL, J. F. MORADO, and G. L. ECKERT.
  2012. Development of a real-time PCR assay for detection of planktonic red king crab (Paralithodes camtschaticus (Tilesius 1815)) larvae. J. Shellfish Res. 31:917-924.

JOHNSON, S. W., A. D. NEFF, J. F. THEDINGA, M. R. LINDEBERG, and J. M. MASELKO.
  2012. Atlas of nearshore fishes of Alaska: a synthesis of marine surveys from 1998 to 2011. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-239, 261 p.  Online. (.pdf, 60 MB).

JONES, D. T., C. D. WILSON, A. De ROBERTIS, C. N. ROOPER, T. C. WEBER, and J. L. BUTLER.
  2012. Evaluation of rockfish abundance in untrawlable habitat: Combining acoustic and complementary sampling tools. Fish. Bull., U.S. 110:332-343.  Online. (.pdf, 1.9 MB).

KENNEDY, A. S., D. R. SALDEN, and P. J. CLAPHAM.
  2012. First high- to low-latitude match of an eastern North Pacific right whale (Eubalaena japonica). Mar. Mammal Sci. 28(4):E539-E544.

KONDZELA, C. M., W. T. McCRANEY, H. T. NGUYEN, and J. R. GUYON.
  2012. Genetic stock composition analysis of chum salmon bycatch samples from the 2010 Bering Sea groundfish fisheries. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-233, 29 p.  Online (.pdf, 1 MB).

KRUSE, G. H., H. I. BROWMAN, K. L. COCHRANE, D. EVANS, G. S. JAMIESON, P. A. LIVINGSTON, D. WOODBY, and C. I. ZHANG (editors).
  2012. Global progress in ecosystem-based fisheries management. Alaska Sea Grant Rep. AK-SG-12-01, University of Alaska, Fairbanks. 396 p.

KRUSE, G. H., H. I. BROWMAN, K. L. COCHRANE, D. EVANS, G. S. JAMIESON, P. A. LIVINGSTON, D. WOODBY, and C. I. ZHANG.
  2012. Steps for future progress in ecosystem-based fisheries management: What's next? Pages 375-380. In Kruse, G. H., H. I. Browman, K. L. Cochrane, D. Evans, G. S. Jamieson, P. A. Livingston, D. Woodby, and C. I. Zhang (editors), Global progress in ecosystem-based fisheries management. Alaska Sea Grant, University of Alaska Fairbanks, AK.

LAAKE, J. L., A. E. PUNT, R. C. HOBBS, M. FERGUSON, D. RUGH, and J. BREIWICK.
  2012. Gray whale southbound migration surveys 1967 - 2006: an integrated re-analysis. J. Cetacean Res. Manage. 12:287-306.

LAMMERS, M. O., R. SMALL, S. ATKINSON, M. CASTELLOTE, J. JENNIGES, A. ROSINSKI, S. MOORE, C. GARNER, and W. W. L. AU.
  2012. Acoustic monitoring of beluga whales (Delphinapterus leucas) in Cook Inlet, Alaska, p. 341-344. In A. N. Popper and A. Hawkins (editors). Effects of Noise on Aquatic Life. Springer, New York.

LAUREL, B. J., L. A. COPEMAN, and C. C. PARRISH.
  2012. Role of temperature on lipid/fatty acid composition in Pacific cod (Gadus macrocephalus) eggs and unfed larvae. Mar. Biol. 159:2025-2034.

LEW, D. K., and D. M. LARSON.
  2012. Economic values for saltwater sport fishing in Alaska: a stated preference analysis. N. Am. J. Fish. Manage. 32:745-759.

LINK J. S., R. J. BELL, P. J. AUSTER, B. E. SMITH, W. J. OVERHOLTZ, A. E. METHRATTRA, F. PRANOVI, and W. J. STOCKHAUSEN.
  2012. Food web and community dynamics of the northeast U.S. large marine ecosystem. U.S. Dep. Commer., Northeast Fish. Sci. Cent. Ref. Doc. 12-15; 96 p.  Online  (http://www.nefsc.noaa.gov/publications/crd/crd1215/).

LONDON, J. M., J. M. Ver HOEF, S. J. JEFFRIES, M. M. LANCE, and P. L. BOVENG.
  2012. Haul-out behavior of harbor seals (Phoca vitulina) in Hood Canal, Washington. PLoS One 7(6):e38180.  Online. (.pdf, 449 KB).

LONG, W. C., E. F. GAMELIN, E. G. JOHNSON, and A. H. HINES.
  2012. Density-dependent indirect effects: Apparent mutualism and apparent competition coexist in a two-prey system. Mar. Ecol. Prog. Ser. 456:139-148.  Online. (.pdf, 808 KB).

LONG, W. C., J. N. GROW, J. E. MAJORIS, and A. H. HINES.
  2012. Effects of anthropogenic shoreline hardening and invasion by Phragmites australis on habitat quality for juvenile blue crabs (Callinectes sapidus). J. Exp. Mar. Biol. Ecol. 409:215-222.

LONG, W. C., and A. H. HINES.
  2012. Scale and the guild functional response: Density-dependent predation varies with plot size. J. Exp. Mar. Biol. Ecol. 413:50–55.

LONG, W. C., J. POPP, K. M. SWINEY, and S. B. Van SANT.
  2012. Cannibalism in red king crab, Paralithodes camtschaticus (Tilesius, 1815): Effects of habitat type and predator density on predator functional response. J. Exp. Mar. Biol. Ecol. 422-423:101-106.

MARSH, J. M., N. HILLGRUBER, and R. J. FOY.
  2012. Temporal and ontogenetic variability in trophic role of four groundfish species -- walleye pollock, Pacific cod, arrowtooth flounder, and Pacific halibut -- around Kodiak Island in the Gulf of Alaska. Trans. Am. Fish. Soc. 141:468-486.

MARTINSON, E. C., H. H. STOKES, and D. L. SCARNECCHIA.
  2012. Use of juvenile salmon growth and temperature change indices to predict groundfish post age-0 yr class strengths in the Gulf of Alaska and eastern Bering Sea. Fish. Oceanogr. 21(4):4, 307-319.

MATKIN, C. O., J. W. DURBAN, E. L. SAULITIS, R. D. ANDREWS, J. M. STRALEY, D. R. MATKIN, and G. M. ELLIS.
  2012. Contrasting abundance and residency patterns of two sympatric populations of transient killer whales (Orcinus orca) in the northern Gulf of Alaska. Fish. Bull., U.S. 110:143-155.  Online. (.pdf, 1.16 MB).

MATTA, M. E., and D. K. KIMURA.
  2012. Age determination manual of the Alaska Fisheries Science Center Age and Growth Program. NOAA Professional Paper NMFS 13, 97 p.  Online. (.pdf, 14.4 MB).

McCLINTOCK, B. T., R. KING, L. THOMAS, J. MATTHIOPOULOS, B. J. MCCONNELL, and J. M. MORALES.
  2012. A general discrete-time modeling framework for animal movement using multistate random walks. Ecol. Monogr. 82:335-349.

MELIN, S. R., J. L. LAAKE, R. L. DELONG, and D. B. SINIFF.
  2012. Age-specific recruitment and natality of California sea lions at San Miguel Island, California. Mar. Mammal Sci. 28(4):751-776.

MELIN, S. R., A. J. ORR, J. D. HARRIS, J. L. LAAKE, and R. L. DELONG.
  2012. California sea lions: an indicator for integrated ecosystem assessment of the California Current system. Cal. Coop. Oceanic Fish. Invest. Rep. 53:140-152.

MILLER, D. A. W., L. A. WEIR, B. T. McCLINTOCK, E. H. C. GRANT, L. L. BAILEY, and T. R. SIMONS.
  2012. Experimental investigation of false positive errors in auditory species occurrence surveys. Ecol. Appl. 22:1665-1674.

MILLER R. J., J. HOCEVAR, R. P. STONE, and D. V. FEDOROV.
  2012. Structure-forming corals and sponges and their use as fish habitat in Bering Sea submarine canyons. PLoS ONE 7(3):e33885.  Available online: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0033885. (.pdf, 602 KB).

MOCKLIN, J. A., D. J. RUGH, S. E. MOORE, and R. P. ANGLISS.
  2012. Using aerial photography to investigate evidence of feeding by bowhead whales. Mar. Mamm. Sci. 28:602-619.

MORADO, J. F., M. S. M. SIDDEEK, D. R. MULLOWNEY, and E. G. DAWE.
  2012. Protistan parasites as mortality drivers in cold water crab fisheries. J. Invertebr. Pathol. 110:201-210.

NORMAN, S. A., C. E. C. GOERTZ, K. A. BUREK, L. T. QUAKENBUSH, L. A. CORNICK, T. A. ROMANO, T. SPOON, W. MILLER, L. A. BECKETT, and R. C. HOBBS.
  2012. Seasonal hematology and serum chemistry of wild beluga whales (Delphinapterus leucas) in Bristol Bay, Alaska, USA. J. Wildl. Dis. 48(1):21-32.

ORR, A. J., S. R. MELIN, and R. L. DELONG.
  2012. Status of the northern fur seal population at San Miguel Island, California, during 2010 and 2011, p.41-58. In J. W. Testa (editor), Fur Seal Investigations, 2010-2011. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-241.

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  2012. Ontogenetic dietary information of the California sea lion (Zalophus californianus) assessed using stable isotope analysis. Mar. Mammal Sci. 28(4):714-732.

ORR, J. W.
  2012. Two new species of snailfishes of the genus Careproctus (Scorpaeniformes: Liparidae) from the Bering Sea and eastern North Pacific Ocean, with a redescription of Careproctus ovigerus. Copeia 2:257-265.

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  2012. Thermal effects on swimming activity and habitat choice in juvenile Pacific cod (Gadus macrocephalus). Mar. Biol. 159:2185-2194.

PEACOCK, E., J. LAAKE, K. L. LAIDRE, E. W. BORN, and S. K. ATKINSON.
  2012. The utility of harvest recoveries of marked individuals to assess polar bear (Ursus maritimus) survival. Arctic 65:391-400.

PIETSCH, T. W., J. W. ORR, and W. N. ESCHMEYER.
  2012. Mustelus felis Ayres, 1854, a senior synonym of the leopard shark, Triakis semifasciata Girard, 1855 (Carchariniformes: Triakidae), invalidated by "reversal of precedence". Copeia 2012:98-99.

PIRTLE, J. L., G. L. ECKERT, and A. W. STONER.
  2012. Habitat structure influences survival and predator-prey interactions of early juvenile red king crab Paralithodes camtschaticus. Mar. Ecol. Prog. Ser. 465:169-184.  Online. (.pdf, 467 KB).

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  2012. Evaluating the impact of buffers to account for scientific uncertainty when setting TACs: Application to red king crab in Bristol Bay, Alaska. ICES J. Mar. Sci. 69:624–634.

PUNT, A. E., and P. R. WADE.
  2012. Population status of the eastern North Pacific stock of gray whales in 2009. J. Cetacean Res. Manage. 12:15-28.

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  2012. Patterns of change in diets of two piscivorous seabird species during 35 years in the Pribilof Islands. Deep-Sea Res. II 65-70:273-291.

RESSLER, P. H., A. De ROBERTIS, J. D. WARREN, J. N. SMITH, and S. KOTWICKI.
  2012. Developing an acoustic survey of euphausiids to understand trophic interactions in the Bering Sea ecosystem. Deep-Sea Res. II 65-70:184-195.

REYNOLDS, J. R., S. C. ROONEY, J. HEIFETZ, H. G. GREENE, B. L. NORCROSS, and S. K. SHOTWELL.
  2012. Habitats and demersal fish communities in the vicinity of Albatross Bank, Gulf of Alaska, p. 539-553. In P. T. Harris and E. K. Baker (editors), Seafloor Geomorphology as Benthic Habitat. Elsevier.

ROBINSON, P. W., D. P. COSTA, D. E. CROCKER, J. P. GALLO-REYNOSO, C. D. CHAMPAGNE, M. A. FOWLER, C. GOETSCH, K. T. GOETZ, J. L. HASSRICK, L. A. HUECKSTAEDT, C. E. KUHN, J. L. MARESH, S. M. MAXWELL, B. I. McDONALD, S. H. PETERSON, S. E. SIMMONS, N. M. TEUTSCHEL, S. VILLEGAS-AMTMANN, and K. YODA.
  2012. Foraging behavior and success of a mesopelagic predator in the northeast Pacific Ocean: Insights from a data-rich species, the northern elephant seal. PLoS One 7(5):e36728.  Online. (.pdf, 1.24 MB).

RODGVELLER, C. J., C. R. LUNSFORD, and J. T. FUJIOKA.
  2012. Effects of maternal age and size on embryonic energy reserves, developmental timing, and fecundity in quillback rockfish (Sebastes maliger). Fish. Bull. 110:36-45.  Online. (.pdf, 1.86 MB).

ROLLAND, R. M., S. E. PARKS, K. E. HUNT, M. CASTELLOTE, P. J. CORKERON, D. P. NOWACEK, S. K. WASSER, and S. D. KRAUS.
  2012. Evidence that ship noise increases stress in right whales. Proc. R. Soc. Lond. [Biol]. 279:2363-2368.

ROMAIN, S., M. DORN, and V. WESPESTAD.
  2012. Results of cooperative research acoustic surveys of walleye pollock (Theragra chalcogramma) in the western Gulf of Alaska from September 2007 to September 2011. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-238, 35 p.  Online. (.pdf, 1.7 MB).

RONE, B. K., C. L. BERCHOK, J. L. CRANCE, and P. J. CLAPHAM.
  2012. Using air-deployed passive sonobuoys to detect and locate critically endangered North Pacific right whales. Mar. Mammal Sci. 28(4):E528-E538.

ROOPER, C. N., J. L. BOLDT, S. BATTEN, and C. GBURSKI.
  2012. Growth and production of Pacific ocean perch (Sebastes alutus) in nursery habitats of the Gulf of Alaska. Fish. Oceanogr. 21:415–429.

ROOPER, C. N., and M. H. MARTIN.
  2012. Comparison of habitat-based indices of abundance with fishery-independent biomass estimates from bottom trawl surveys. Fish. Bull. 110:21-35.  Online. (.pdf, 1 MB).

ROOPER, C. N., M. H. MARTIN, J. L. BUTLER, D. T. JONES, and M. ZIMMERMANN.
  2012. Estimating species and size composition of rockfishes to verify targets in acoustic surveys of untrawlable areas. Fish. Bull., U.S. 110:317-331.  Online. (.pdf, 1.18 MB).

RUDERSHAUSEN, P. J., J. A. BUCKEL, G. BOLTON, R. W. GREGORY, T. W. AVERETT, and P. B. CONN.
  2012. A comparison between circle hook and J hook performance in the dolphinfish, yellowfin tuna, and wahoo troll fishery off the coast of North Carolina. Fish. Bull., U.S. 110:156–175.  Online. (.pdf, 1.18 MB).

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  2012. Growth and distributional correlates of behavior in three co-occurring juvenile flatfishes. Mar. Ecol. Prog. Ser. 460:183-193.  Online. (.pdf, 193 KB).

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  2012. Calculating impacts of exogenous output changes: Application of a social accounting matrix (SAM) model to Alaska fisheries. Ann. Reg. Sci. DOI 10.1007/s00168-012-0546-9.

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  2012. An atlas of reproductive development in rockfishes, genus Sebastes. NOAA Professional Paper NMFS 14, 77 p.  Online. (.pdf, 35.1 MB).

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SIBERT, J. R., S. J. HARLEY, J. N. IANELLI, and A. E. PUNT.
  2012. External review of IATTC bigeye tuna assessment. IATTC Special Report 19, 31 p.

SIGLER, M. F., K. J. KULETZ, P. H. RESSLER, N. A. FRIDAY, C. D. WILSON, and A. N. ZERBINI.
  2012. Marine predators and persistent prey in the southeast Bering Sea. Deep-Sea Res. II 65-70:292-303.

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  2012. Influence of environment, morphology, and instrument size on lactating northern fur seal foraging behavior on the Lovushki Islands, Russia. Mar. Ecol. Prog. Ser. 471:293-308.  Online. (.pdf, 709 KB).

SMART, T. I., J. T. DUFFY-ANDERSON, J. K. HORNE, E. V. FARLEY, C. D. WILSON, and J. M. NAPP.
  2012. Influence of environment on walleye pollock eggs, larvae, and juveniles in the southeastern Bering Sea. Deep-Sea Res. II 65–70:196-207.

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  2012. Alternating temperature states influence walleye pollock early life stages in the southeastern Bering Sea. Mar. Ecol. Prog. Ser. 455:257-267.  Online. (.pdf, 1.47 MB).

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  2012. A review of data on abundance, trends in abundance, habitat use and diet of ice-breeding seals in the Southern Ocean. CCAMLR Sci. 19:49-74.

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  2012. Simulation modeling of a trawl-acoustic survey for patchily distributed species. Fish. Res. 125-126:289-299.

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  2012. Landscape genetics reveals population subdivision in Bering Sea and Aleutian Islands Pacific cod. Trans. Am. Fish. Soc. 141:1557-1573.

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STACHURA, M. M., C. R. LUNSFORD, C. J. RODGVELLER, and J. HEIFETZ.
  2012. Estimation of discard mortality of sablefish (Anoplopoma fimbria) in Alaska longline fisheries. Fish. Bull., U.S. 110:271-279.  Online. (.pdf, 564 KB).

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