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ADAMS, C. F., R. J. FOY, J. J. KELLEY, and K. O. COYLE.
  2009. Seasonal changes in the diel vertical migration of walleye pollock (Theragra chalcogramma) in the northern Gulf of Alaska. Environ. Biol. Fishes 86:297-305.

A’MAR, Z. T., A. E. PUNT, and M. W. DORN.
  2009. The impact of regime shifts on the performance of management strategies for the Gulf of Alaska walleye pollock (Theragra chalcogramma) fishery. Can. J. Fish. Aquat. Sci. 66:2222-2242.

ANDERSON, E. C., D. E. STEVENSON, and G. SHINOHARA.
  2009. Systematic review of the genus Bothrocara Bean 1890 (Teleostei: Zoarcidae). Ichthyol. Res. 56:172-194.

ANDREWS, A. G., E. V. FARLEY, Jr., J. H. MOSS, J. M. MURPHY, and E. F. HUSOE.
  2009. Energy density and length of juvenile pink salmon Oncorhynchus gorbuscha in the eastern Bering Sea from 2004 to 2007: a period of relatively warm and cool sea surface temperatures. N. Pac. Anadr. Fish Comm. Bull. 5:183-189.  Online. (.pdf, 988 KB).

ANDREWS, A. G., and R. J. FOY.
  2009. Geographical variation in carbon and nitrogen stable isotope ratios in spiny dogfish in the northeastern Pacific Ocean, p. 269-276. In V. R. Gallucci, G. A. McFarlane, and G. G. Bargmann (editors), Biology and Management of Dogfish Sharks. Am. Fish. Soc., Bethesda, Maryland.

ANDREWS, A. H., R. P. STONE, C. C. LUNDSTROM, and A. P. DeVOGELAERE.
2009. Growth rate and age determination of bamboo corals from the northeastern Pacific Ocean using refined 210Pb dating. Mar. Ecol. Prog. Ser. 397:173-185.  Online. (.pdf, 728 KB).

ANGLISS, R. P., and B. M. ALLEN.
  2009. Alaska marine mammal stock assessments, 2008. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-193, 258 p.  Online. (.pdf, 14.4 MB).

BACHELER, N. M., K. M. BAILEY, L. CIANNELLI, V. BARTOLINO, and K-S. CHAN.
  2009. Density-dependent, landscape, and climate effects on spawning distribution of walleye pollock Theragra chalcogramma. Mar. Ecol. Prog. Ser. 391:1-12.  Online. (.pdf, 736 KB).

BARBEAUX, S. J., and D. FRASER.
  2009. Aleutian Islands cooperative acoustic survey study for 2006. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-198, 91 p.  Online. (.pdf, 4.15 MB).

BEAMISH, R. J., R. B. RIDELL, K. L. LANGE, E. FARLEY, Jr., S. KANG, T. NAGASAWA, V. RADCHENKO, O. TEMNYKH, and S. URAWA.
  2009. A long-term research and monitoring plan (LRMP) for Pacific salmon (Oncorhynchus spp.) in the North Pacific Ocean. N. Pac. Anadr. Fish Comm. Spec. Publ. No.1, 48 p.

BENKWITT, C. E., R. D. BRODEUR, T. P. HURST, and E. A. DALY.
  2009. Diel feeding chronology, gastric evacuation, and daily food consumption of juvenile Chinook salmon in Oregon coastal waters. Trans. Am. Fish. Soc. 138:111-120.

BOERSMA, P. D., G. A. REBSTOCK, E. FRERE, and S. E. MOORE.
  2009. Following the fish: Penguins and productivity in the South Atlantic. Ecol. Monogr. 79:59-76.

BOLDT, J. L., and C. N. ROOPER.
  2009. Abundance, condition, and diet of juvenile Pacific ocean perch (Sebastes alutus) in the Aleutian Islands. Fish. Bull., U.S. 107:278-285.  Online. (.pdf, 634 KB).

BOVENG, P. L., J. L. BENGTSON, T. W. BUCKLEY, M. F. CAMERON, S. P. DAHLE, B. P. KELLY, B. A. MEGREY, J. E. OVERLAND, and N. J. WILLIAMSON.
  2009. Status review of the spotted seal (Phoca largha). U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-200, 153 p.  Online (.pdf, 7.13 MB).

BRAJE, T. J., and R. L. DELONG.
  2009. Ancient sea mammal exploitation on the south coast of San Miguel Island, p. 43-52. In C.C. Damiani and D.K. Garcelon (editors), Proceedings of the Seventh California Islands Symposium, Oxnard, California, February 5-8, 2008. Arcata, CA, Institute for Wildlife Studies.

BUCKLEY, T. W., A. GREIG, and J. L. BOLDT.
  2009. Describing summer pelagic habitat over the continental shelf in the eastern Bering Sea, 1982-2006. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-196, 49 p.  Online. (.pdf, 842 KB).

BURDIN, A. M., D. R. HENNEN, D. G. CALKINS, V. N. BURKANOV, V. S. NIKULIN, and T. Yu. LISITSINA.
  2009. Can we see a cohort effect on survival of Steller sea lions (Eumetopias jubatus) at Kozlova Cape rookery (eastern Kamchatka, Russia)? Mar. Mammal Sci. 25(4):888-901.

BUSBY, M. S., and R. L. CARTWRIGHT.
  2009. Paraliparis adustus and Paraliparis bullacephalus: Two new snailfish species (Teleostei: Liparidae) from Alaska. Ichthyol. Res. 56:245-252.

CARLS, M. G., and J. P. MEADOR.
  2009. A perspective on the toxicity of petrogenic PAHs to developing fish embryos related to environmental chemistry. Hum. Ecol. Risk Assess. 15:1084-1098.

CARRETTA, J. V., K. A. FORNEY, M. S. LOWRY, J. BARLOW, J. BAKER, D. JOHNSTON, B. HANSON, M. M. MUTO, D. LYNCH, and L. CARSWELL.
  2009. U.S. Pacific marine mammal stock assessments: 2008. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-SWFSC-434, 316p. + appendices.  Online. (.pdf, 6.48).

CARTWRIGHT, R. L.
  2009. Description of early life history stages of the northern sculpin (Icelinus borealis Gilbert) (Teleostei: Cottidae). Fish. Bull., U.S. 107:175-185.  Online (.pdf, 1.04 MB).

CHILTON, E. A., C. E. ARMISTEAD, and R. J. FOY.
  2009. The 2009 eastern Bering Sea continental shelf bottom trawl survey: Results for commercial crab species. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-201, 101 p.  Online (.pdf, 7.9 MB).

CIECIEL, K., E. V. FARLEY, Jr., and L. B. EISNER.
  2009. Jellyfish and juvenile salmon associations with oceanographic characteristics during warm and cool years in the eastern Bering Sea. N. Pac. Anadr. Fish Comm. Bull. 5:209-224.  Online. (.pdf, 1.24 MB).

CIECIEL, K., B. J. PYPER, and G. L. ECKERT.
  2009. Tag retention and effects of tagging on movement of the giant red sea cucumber Parastichopus californicus. N. Am. J. Fish. Manage. 29:288-294.

CLAPHAM, P., and Y. IVASHCHENKO.
  2009. A whale of a deception. Mar. Fish. Rev. 71(1):44-52.  Online. (.pdf, 2.16MB).

CLAPHAM, P., Y. MIKHALEV, W. FRANKLIN, D. PATON, C. S. BAKER, Y. V. IVASHCHENKO, and R. L. BROWNELL, Jr.
  2009. Catches of humpback whales, Megaptera novaeangliae, by the Soviet Union and other nations in the Southern Ocean, 1947-1973. Mar. Fish. Rev. 71(1):39-43.  Online. (.pdf, 437KB).

CONN, P. B., G. C. WHITE, and J. L. LAAKE.
  2009. Simulation performance of Bayesian estimators of abundance employing age-at-harvest and mark-recovery data, p. 965-986. In D. L. Thomson, E. G. Cooch and M. J. Conroy (editors), Modeling Demographic Processed in Marked Populations. New York, Springer.

CONNERS, M. E., J. CAHALAN, S. GAICHAS, W. A. KARP, T. LOOMIS, and J. WATSON.
  2009. Sampling for estimation of catch composition in Bering Sea trawl fisheries. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-199, 77p.  Online (.pdf, 2.33 MB).

COURTENAY, W. R., Jr., B. B. COLLETTE, T. E. ESSINGTON, R. HILBORN, J. W. ORR, D. PAULY, J. E. RANDALL, and W. F. SMITH-VANIZ.
  2009. Risks of introductions of marine fishes: Reply to Briggs. Fisheries 34:181-186.

COX, M. K., and R. HEINTZ.
  2009. Electrical phase angle as a new method to measure fish condition. Fish. Bull., U.S. 107:477-487.  Online. (.pdf, 370KB).

CRESSIE, N., C. A. CALDER, J. S. CLARK, J. M. Ver HOEF, and C. K. WIKLE.
  2009. Accounting for uncertainty in ecological analysis: the strengths and limitations of hierarchical statistical modeling. Ecol. Appl. 19:553-570.

CROSS, A. D., D. A. BEAUCHAMP, J. H. MOSS, and K. W. MYERS.
  2009. Interannual variability in early marine growth, size-selective mortality, and marine survival for Prince William Sound pink salmon. Mar. Coastal Fish. 1:57-70.  Online. (.pdf, 487 KB).

CUNNINGHAM, K. M., M. F. CANINO, I. B. SPIES, and L. HAUSER.
  2009. Genetic isolation by distance and localized fjord population structure in Pacific cod (Gadus macrocephalus): Limited effective dispersal in the northeastern Pacific Ocean. Can. J. Fish. Aquat. Sci. 66:153-166.

DAHLHEIM, M. E., P. A. WHITE, and J. M. WAITE.
  2009. Cetaceans of Southeast Alaska: Distribution and seasonal occurrence. J. Biogeogr. 36:410-426.

DELONG, R. L., A. J. ORR, R. S. JENKINSON, and E. T. LYONS.
  2009. Treatment of northern fur seal (Callorhinus ursinus) pups with ivermectin reduces hookworm-induced mortality. Mar. Mammal Sci. 25(4):944-948.

DOYLE, M. J., S. J. PICQUELLE, K. L. MIER, M. C. SPILLANE, and N. A. BOND.
  2009. Larval fish abundance and physical forcing in the Gulf of Alaska, 1981-2003. Prog. Oceanogr. 80:163-187.

FARLEY, E. V., Jr.
  2009. Summary and future plan of BASIS. N. Pac. Anadr. Fish Comm. Bull. 5:355-357.  Online. (.pdf, 488 KB).

FARLEY, E. V., Jr., and J. H. MOSS.
  2009. Growth rate potential of juvenile chum salmon on the eastern Bering Sea shelf: an assessment of salmon carrying capacity. N. Pac. Anadr. Fish Comm. Bull. 5:265-277.  Online. (.pdf, 2.35 MB).

FARLEY, E. V., Jr., J. MURPHY, J. MOSS, A. FELDMANN, and L. EISNER.
 2009. Marine ecology of western Alaska juvenile salmon, p. 307-330. In C. C. Krueger and C. E. Zimmerman (editors), Pacific Salmon: Ecology and Management of Western Alaska's Populations. Am. Fish. Soc., Symp. 70, Bethesda, Maryland.

FARLEY, E. V., Jr., and M. TRUDEL.
 2009. Growth rate potential of juvenile sockeye salmon in warmer and cooler years on the eastern Bering Sea shelf. J. Mar. Biol. Vol. 2009: Article 640215, 10 p.  Online. (.pdf, 1.56 MB).

FELTHOVEN, R., C. MORRISON PAUL, and M. TORRES.
  2009. Measuring productivity change and its components for fisheries: the case of the Alaskan pollock fishery, 1994-2003. Nat. Resour. Model. 22:105-136.

FELTHOVEN, R. G., W. C. HORRACE, and K. E. SCHNIER.
  2009. Estimating heterogeneous primal capacity and capacity utilization measures in a multi-species fishery. J. Product. Anal. 32:173-189.

FEWSTER, R. M., S. T. BUCKLAND, K. P. BURNHAM, D. L. BORCHERS, P. E. JUPP, J. L. LAAKE, and L. THOMAS.
  2009. Estimating the encounter rate variance in distance sampling. Biometrics 65:225-236.

FOWLER, C. W.
  2009. Systemic management: Sustainable human interactions with ecosystems and the biosphere. Oxford University Press, Oxford. 295 p.  Appendices (.pdf, 62.8 KB).

FOWLER, C. W., and L. HOBBS.
  2009. Are we asking the right questions in science and management? U. S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-202, 59 p.  Online. (.pdf, 1 MB).

FOWLER, C. W., T. E. JEWELL, and M. V. LEE.
  2009. Harvesting young-of-the-year from large mammal populations: an application of systemic management. U.S. Dep. Commer., NOAA Tech. Memo., NMFS-AFSC-192, 65 p.  Online. (.pdf, 1 MB).

GAICHAS, S., G. SKARET, J. FALK-PETERSEN, J. S. LINK, W. OVERHOLTZ, B. A. MEGREY, H. GJØSÆTER, W. T. STOCKHAUSEN, A. DOMMASNES, K. D. FRIEDLAND, and K. AYDIN.
  2009. A comparison of community and trophic structure in five marine ecosystems based on energy budgets and system metrics. Prog. Oceanogr. 81:47-62.

GOLDSTEIN, T., T. S. ZABKA, R. L. DELONG, E. A. WHEELER, G. YLITALO, S. BARGU, M. SILVER, T. LEIGHFIELD, F. VAN DOLAH, G. LANGLOIS, I. SIDOR, J. L. DUNN, and F. M. D. GULLAND.
  2009. The role of domoic acid in abortion and premature parturition of California sea lions (Zalophus californianus) on San Miguel Island, California. J. Wildl. Dis. 45:91-108.

GUYON, J. R., GOSWAMI, J., JUN, S. J., THORNE, M., HOWELL, M., PUSACK, T., KAWAHARA, G., STEFFEN, L. S., GALDZICKI, M., and L. M. KUNKEL.
  2009. Genetic isolation and characterization of a splicing mutant of zebrafish dystrophin. Hum. Mol. Genet.18:202-1.

HASTINGS, K. K., T. S. GELATT, and J. C. KING.
  2009. Postbranding survival of Steller sea lion pups at Lowrie Island in Southeast Alaska. J. Wildl. Manage. 73:1040-1051.

HAYNIE, A. C., R. L. HICKS, and K. E. SCHNIER.
  2009. Common property, information, and cooperation: Commercial fishing in the Bering Sea. Ecol. Econ. 69:406-413.

HAZLETT, S. D., N. MISARTI, A. G. ANDREWS, G. A. McFARLANE, and M. J. WOOLLER.
 2009. Stable isotopic variability along spiny dogfish spines: Implications for retrospective ecological studies, p. 259-267. In V. R. Gallucci, G. A. McFarlane, and G. G. Bargmann (editors), Biology and Management of Dogfish Sharks. Am. Fish. Soc., Bethesda, Maryland.

HEARD, W. R.
  2009. Alaska salmon, p. 189-200. In Our Living Oceans. Report on the status of U.S. living marine resources, 6th edition. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-F/SPO-80.  Online. (.pdf, 842 KB).

HEIFETZ, J., R. P. STONE, and S. K. SHOTWELL.
  2009. Damage and disturbance to coral and sponge habitat of the Aleutian Archipelago. Mar. Ecol. Prog. Ser. 397:295-303.  Online. (.pdf, 586KB).

HERMAN, D. P., G. M. YLITALO, J. ROBBINS, J. M. STRALEY, C. M. GABRIELE, P. J. CLAPHAM, R. BOYER, K. L. TILBURY, R. W. PEARCE, and M. M. KRAHN.
 2009. Age determination of humpback whales Megaptera novaeangliae rough blubber fatty acid compositions of biopsy samples. Mar. Ecol. Prog. Ser. 392:277-293.  Online. (.pdf, 474 KB).

HERMANN, A. J., S. HINCKLEY, E. L. DOBBINS, D. B. HAIDVOGEL, N. A. BOND, C. MORDY, N. KACHEL, and P. J. STABENO.
  2009. Quantifying cross-shelf and vertical nutrient flux in the coastal Gulf of Alaska with a spatially nested, coupled biophysical model. Deep-Sea Res. II 56:2474-2486.

HINCKLEY, S., J. M. NAPP, A. J. HERMANN, and C. PARADA.
  2009. Simulation of physically mediated variability in prey resources of a larval fish: a three-dimensional NPZ model. Fish. Oceanogr. 18:201-223.

HINCKLEY, S., K. O. COYLE, G. GIBSON, A. J. HERMANN, and E. L. DOBBINS.
  2009. A biophysical NPZ model with iron for the Gulf of Alaska: Reproducing the differences between an oceanic HNLC ecosystem and a classical northern temperate shelf ecosystem. Deep-Sea Res. II 56:2520-2536.

HOFF, G. R.
  2009. Skate Bathyraja spp. egg predation in the eastern Bering Sea. J. Fish Biol. 74:250-269.

HOFF, G. R.
  2009. Embryo developmental events and the egg case of the Aleutian skate Bathyraja aleutica (Gilbert) and the Alaska skate Bathyraja parmifera (Bean). J. Fish Biol. 74:483-501.

HOFF, G. R., and L. L. BRITT.
  2009. Results of the 2008 eastern Bering Sea upper continental slope survey of groundfish and invertebrate resources. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-197, 294 p.  Online. (.pdf, 10.4 MB).

HOFFMAN, J. I., K. K. DASMAHAPATRA, W. AMOS, C. D. PHILLIPS, T. S. GELATT, and J. W. BICKHAM.
  2009. Contrasting patterns of genetic diversity at three different genetic markers in a marine mammal metapopulation. Mol. Ecol. 18:2961-2978.

HOLLIDAY, D. V., P. L. DONAGHAY, C. F. GREENLAW, J. M. NAPP, and J. M. SULLIVAN.
  2009. High-frequency acoustics and bio-optics in ecosystems research. ICES J. Mar. Sci. 66:974-980.

HOLLOWED, A. B., and K. M. BAILEY.
  2009. Climate and fisheries: the past, the future, and the need for coalescence, p. 597-619. In R. J. Beamish and B. J. Rothschild (editors), The Future of Fisheries Science in North America, Vol. 31, Fish & Fisheries Series, Springer. Secaucus, N.J.

HOLLOWED, A. B., N. A. BOND, T. K. WILDERBUER, W. T. STOCKHAUSEN, Z. T. A'MAR, R. J. BEAMISH, J. E. OVERLAND, and M. J. SCHIRRIPA.
  2009. A framework for modeling fish and shellfish responses to future climate change. ICES J. Mar. Sci. 66:1584-1594.

HONKALEHTO, T., D. JONES, A. McCARTHY, D. McKELVEY, M. GUTTORMSEN, K. WILLIAMS, and N. WILLIAMSON.
  2009. Results of the echo integration-trawl survey of walleye pollock (Theragra chalcogramma) on the U.S. and Russian Bering Sea shelf in June and July 2008. U.S. Dep. Commer., NOAA Tech. Memo., NMFS-AFSC-194, 56 p.  Online. (.pdf, 2 MB).

HUMBORSTAD, O-B., M. W. DAVIS, and S. LØKKEBORG.
  2009. Reflex impairment as a measure of vitality and survival potential of Atlantic cod (Gadus morhua). Fish. Bull., U.S. 107:395-402.  Online. (.pdf, 430 KB).

HURST, T. P., D. W. COOPER, J. S. SCHEINGROSS, E. M. SEALE, B. J. LAUREL, and M. L. SPENCER.
  2009. Effects of ontogeny, temperature, and light on vertical movements of larval Pacific cod (Gadus macrocephalus). Fish. Oceanogr. 18:301-311.

INCARDONA, J. P., M. G. CARLS, H. L. DAY, C. A. SLOAN, J. L. BOLTON, T. K. COLLIER, and N. L. SCHOLZ.
  2009. Cardiac arrythmia is the primary response of embryonic Pacific herring exposed to crude oil during weathering. Environ. Sci. Technol. 43:201-207.

JAKOBSEN, T., M. J. FOGARTY, B. A. MEGREY, and E. MOKSNESS (editors).
  2009. Fish reproductive biology: Implications for assessment and management. Wiley-Blackwell Publishers. 440 p.

JAKOBSEN, T., M. J. FOGARTY, B. A. MEGREY, and E. MOKSNESS.
  2009. Introduction, p. 1-8. In T. Jakobsen, M. J. Fogarty, B. A. Megrey, and E. Moksness (editors), Fish Reproductive Biology: Implications for Assessment and Management. Wiley-Blackwell Publishers.

JECH, J. M., W. MICHAELS, and C. WILSON.
  2009. Improving fisheries science with advanced sampling technologies, p. 67-75. In Our Living Oceans. Report on the status of U.S. living marine resources, 6th edition. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-F/SPO-80.  Online. (.pdf, 3.7 MB)

JEFFERSON, T. A., D. FERTL, J. BOLANOS-JIMENEZ, and A. N. ZERBINI.
  2009. Distribution of common dolphins (Delphinus spp.) in the western Atlantic Ocean: a critical re-examination. Mar. Biol. 156:1109-1124.

JOHNSON, S. W., J. F. THEDINGA, and A. D. NEFF.
  2009. Invasion by saffron cod Eleginus gracilis into nearshore habitats of Prince William Sound, Alaska, USA. Mar. Ecol. Prog. Ser. 389:203-212.  Online. (.pdf, 1.66 MB).

JORGENSEN, E. M.
  2009. Field guide to squids and octopods of the eastern North Pacific and Bering Sea. Alaska Sea Grant Program Report No. ED-65, University of Alaska, Fairbanks, AK. 100 p.

KARIYA, T., M. IGARASHI, K. WADA, V. N. BURKANOV, S. KOYAMA, H. HOSHINO, and T. OSHIDA.
  2009. Lack of sequence variation of Y chromosome-linked loci in Steller's sea lions (Eumetopias jubatus) from Iony Island and the Kuril Islands. Mammal Study 34:33-36.

KASPERSKI, S., and R. WIELAND.
  2009. When is it optimal to delay harvesting? The role of ecological services in the northern Chesapeake Bay oyster fishery. Mar. Res. Econ. 24:361-385.

KONDZELA, C., M. GARVIN, R. RILEY, J. MURPHY, J. MOSS, S. A. FULLER, and A. GHARRETT.
  2009. Preliminary genetic analysis of juvenile chum salmon from the Chukchi Sea and Bering Strait. N. Pac. Anadr. Fish Comm. Bull. 5:25-27.  Online. (.pdf, 505 KB).

KOTWICKI, S., A. De ROBERTIS, P. von SZALAY, and R. TOWLER.
  2009. The effect of light intensity on the availability of walleye pollock (Theragra chalcogramma) to the bottom trawl and acoustic surveys. Can. J. Fish. Aquat. Sci. 66:983-994.

KUHN, C. E., D. E. CROCKER, Y. TREMBLAY, and D. P. COSTA.
  2009. Time to eat: Measurements of feeding behaviour in a large marine predator, the northern elephant seal Mirounga angustirostris. J. Anim. Ecol. 78:513-523.

KUHN, C. E., D. S. JOHNSON, R. R. REAM, and T. S. GELATT.
  2009. Advances in the tracking of marine species: Using GPS locations to evaluate satellite track data and a continuous-time movement model. Mar. Ecol. Prog. Ser. 393:97-109.  Online. (.pdf, 283 KB).

LAAKE, J., A. PUNT, R. HOBBS, M. FERGUSON, D. RUGH, and J. BREIWICK.
  2009. Re-analysis of gray whale southbound migration surveys, 1967-2006. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-203, 55 p. Online (.pdf, 1.57 MB).

LaCROIX, J. J., A. C. WERTHEIMER, J. A. ORSI, M. V. STURDEVANT, E. A. FERGUSSON, and N. BOND.
  2009. A top-down survival mechanism during early marine residency explains year-class strength of coho salmon in Southeast Alaska. Deep-Sea Res. II 56:2560-2569.

LADD, C., W. R. CRAWFORD, C. E. HARPOLD, W. K. JOHNSON, N. B. KACHEL, P. J. STABENO, and F. WHITNEY.
  2009. A synoptic survey of young mesoscale eddies in the eastern Gulf of Alaska. Deep-Sea Res. II 56:2460-2473.

LANDER, M. E., T. R. LOUGHLIN, M. G. LOGSDON, G. R. VanBLARICOM, B. S. FADELY, and L. W. FRITZ.
  2009. Regional differences in the spatial and temporal heterogeneity of oceanographic habitat used by Steller sea lions. Ecol. Appl.19:1645-1659.

LANNOO, M. J., J. T. EASTMAN, and J. W. ORR.
  2009. Nervous and sensory systems in sub-arctic and Antarctic snailfishes of the genus Paraliparis (Teleostei: Scorpaeniformes: Liparidae). Copeia 2009(4):732-739.

LAUREL, B. J., C. H. RYER, B. KNOTH, and A. W. STONER.
  2009. Temporal and ontogenetic shifts in habitat use of juvenile Pacific cod (Gadus macrocephalus). J. Exp. Mar. Biol. Ecol. 377:28-35.

LAUTH, R. R., and E. ACUNA.
  2009. Results of the 2008 eastern Bering Sea continental shelf bottom trawl survey of groundfish and invertebrate resources. U.S. Dep. Commer., NOAA Tech. Memo., NMFS-AFSC-195, 229 p.  Online (.pdf, 8 MB).

LEA, M-A., D. JOHNSON, R. REAM, J. STERLING, S. MELIN, and T. GELATT.
  2009. Extreme weather events influence dispersal of naïve northern fur seals. Biol. Lett. 5:252-257.

LINK, J. S., W. T. STOCKHAUSEN, G. SKARET, W. OVERHOLTZ, B. A. MEGREY, H. GJØSÆTER, S. GAICHAS, A. DOMMASNES, J. FALK-PETERSEN, J. KANE, F. J. MUETER, K. D. FRIEDLAND, and J. A. HARE
  2009. A comparison of biological trends from four marine ecosystems: Synchronies, differences, and commonalities. Prog. Oceanogr. 81:29-46.

LITZOW, M. A., and D. URBAN.
  2009. Fishing through (and up) Alaskan food webs. Can. J. Fish. Aquat. Sci. 66:201-211.

MALECHA, P. W., and R. P. STONE.
  2009. Response of the sea whip Halipteris willmoesi to simulated trawl disturbance and its vulnerability to subsequent predation. Mar. Ecol. Prog. Ser. 388:197-206.  Online. (.pdf, 363 KB).

MALICK, M. J., M. D. ADKINSON, and A. C. WERTHEIMER.
  2009. Variable effects of biological and environmental processes on coho salmon marine survival in Southeast Alaska. Trans. Am. Fish. Soc. 138:846-860.

MARTINSON, E. C., J. H. HELLE, D. L. SCARNECCHIA, and H. H. STOKES.
  2009. Growth and survival of sockeye salmon (Oncorhynchus nerka) from Karluk Lake and River, Alaska, in relation to climatic and oceanic regimes and indices, 1922-2000. Fish. Bull., U.S. 107:488-500.  Online. (.pdf, 924 KB).

MARTINSON, E. C., J. H. HELLE, D. L. SCARNECCHIA, and H. H. STOKES.
  2009. Alaska sockeye salmon scale patterns as indicators of climatic and oceanic shifts in the North Pacific Ocean, 1922–2000. N. Pac. Anadr. Fish Comm. Bull. 5:177-182.  Online. (.pdf, 535 KB).

MASUDA, M., F. THROWER, and K. M. NICHOLS.
  2009. The effects of violating Hardy-Weinberg equilibrium assumptions on a cluster-based population mixture analysis of steelhead populations in Southeast Alaska. North Am. J. Fish. Manage. 29:140-150.

MAUNDER, M. N., J. T. SCHNUTE, and J. N. IANELLI.
  2009. Computers in fisheries population dynamics, p. 337-372. In B. A. Megrey, and E. Moksness (editors), Computers in Fisheries Research, Second ed. Springer, Dordrecht, Netherlands.

McCONNAUGHEY, R. A., and S. E. SYRJALA.
  2009. Statistical relationships between the distributions of groundfish and crabs in the eastern Bering Sea and processed returns from a single-beam echosounder. ICES J. Mar. Sci. 66:1425-1432.  Online. (.pdf, 361KB).

MEGREY, B. A., and E. MOKSNESS (editors).
  2009. Computers in fisheries research, Second ed. Springer, Dordrecht, Netherlands. 421 p.

MEGREY, B. A., and E. MOKSNESS.
  2009. Past, present and future trends in the use of computers in fisheries research, p. 1-30. In B. A. Megrey, and E. Moksness (editors), Computers in Fisheries Research, Second ed. Springer, Dordrecht, Netherlands.

MEGREY, B. A., J. A. HARE, W. T. STOCKHAUSEN, A. DOMMASNES, H. GJØSÆTER, W. OVERHOLTZ, S. GAICHAS, G. SKARET, J. FALK-PETERSEN, J. S. LINK, and K. D. FRIEDLAND.
  2009. A cross-ecosystem comparison of spatial and temporal patterns of covariation in the recruitment of functionally analogous fish stocks. Prog. Oceanogr. 81:63-92.

MIZROCH, S. A., D. W. RICE, D. ZWIEFELHOFER, J. WAITE, and W. L. PERRYMAN.
  2009. Distribution and movements of fin whales in the North Pacific Ocean. Mammal Rev. 39:193-227.

MOLES, A.
  2009. Behavioural response of pink salmon fry Oncorhynchus gorbuscha to fresh, weathered, and dispersed crude oil, p. 837-847. In Proceedings of the Thirty-second Arctic Marine Oil Spill Technical Seminar on Environmental Contamination and Response, Environment Canada, Ottawa, Ontario.

MORRISON PAUL, C. J., M. O. TORRES, and R. G. FELTHOVEN.
  2009. Fishing revenue, productivity, and product choice in the Alaskan pollock fishery. Environ. Resour. Econ. 44:457-474.

MOSS, J. H., D. A. BEAUCHAMP, A. D. CROSS, E. V. FARLEY, J. M. MURPHY, J. H. HELLE, R. V. WALKER, and K. W. MYERS.
  2009. Bioenergetic model estimates of interannual and spatial patterns in consumption demand and growth potential of juvenile pink salmon (Oncorhynchus gorbuscha) in the Gulf of Alaska. Deep-Sea Res. II 56:2553-2559.

MOSS, J. H., E. V. FARLEY, Jr., A. M. FELDMANN, and J. N. IANELLI.
  2009. Spatial distribution, energetic status, and food habits of eastern Bering Sea age-0 walleye pollock. Trans. Am. Fish. Soc. 138:497-505.

MOSS, J. H., J. M. MURPHY, E. V. FARLEY, Jr., L. B. EISNER, and A. G. ANDREWS.
  2009. Juvenile pink and chum salmon distribution, diet, and growth in the northern Bering and Chukchi seas. N. Pac. Anadr. Fish Comm. Bull. 5:191-196.  Online. (.pdf, 1.23 MB).

MURPHY, J. M., W. D. TEMPLIN, E. V. FARLEY, Jr., and J. E. SEEB.
  2009. Stock-structured distribution of western Alaska and Yukon juvenile Chinook salmon (Oncorhynchus tshawytscha) from United States BASIS surveys, 2002–2007. N. Pac. Anadr. Fish Comm. Bull. 5:5:51-59.  Online. (.pdf, 1.35 MB).

NICHOL, D. G., and D. A. SOMERTON.
  2009. Evidence of the selection of tidal streams by northern rock sole (Lepidopsetta polyxystra) for transport in the eastern Bering Sea. Fish. Bull., U.S. 107:221-234.  Online. (.pdf, 1.7 MB).

NORBERG, S. E., V. N. BURKANOV, and R. D. ANDREWS.
  2009. Serum chemistry values of free-ranging, lactating northern fur seals (Callorhinus ursinus). J. Wildl. Dis. 45:843-848.

NOREN, D. P., L. D. REA, and T. R. LOUGHLIN.
  2009. A model to predict fasting capacities and utilization of body energy stores in weaned Steller sea lions (Eumetopias jubatus) during periods of reduced prey availability. Can. J. Zool. 87:852-864.

ORMSETH, O. A., and B. L. NORCROSS.
  2009. Causes and consequences of life-history variation in North American stocks of Pacific cod. ICES J. Mar. Sci. 66:349-357.

ORR, A. J., S. D. NEWSON, and R. L. DELONG.
  2009. Variation in stable carbon and nitrogen isotope values from multiple tissues of California sea lions (Zalophus californianus), p. 121-129. In C.C. Damiani and D.K. Garcelon (editors), Proceedings of the Seventh California Islands Symposium, Oxnard, California, February 5-8, 2008. Arcata, CA, Institute for Wildlife Studies.

PARSONS, K. M., K. C. BALCOMB III, J. K. B. FORD, and J. W. DURBAN.
  2009. The social dynamics of southern resident killer whales and conservation implications for this endangered population. Anim. Behav. 77:963-971.

PATRICK, W. S., P. SPENCER, O. ORMSETH, J. COPE, J. FIELD, D. KOBAYASHI, T. GEDAMKE, E. CORTÉS, K. BIGELOW, W. OVERHOLTZ, J. LINK, and P. LAWSON.
  2009. Use of productivity and susceptibility indices to determine stock vulnerability, with example applications to six U.S. fisheries. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-F/SPO-101, 90 p.  Online. (.pdf, 1.55 MB).

PERMYAKOV, P. A., and V. N. BURKANOV.
  2009. Interactions between killer whales (Orcinus orca) and Steller sea lions (Eumetopias jubatus) in the vicinity of Brat Chirpoev Island, Kuril Islands. Russian J. Mar. Biol. 35:255-258.

PHILLIPS, C. D., J. W. BICKHAM, J. C. PATTON, and T. S. GELATT.
  2009. Systematics of Steller sea lions (Eumetopias jubatus): Subspecies recognition based on concordance of genetics and morphometrics. Occas. Pap. Mus. Texas Tech Univ. 283:1-15.

PHILLIPS, C. D., R. G. TRUJILLO, T. S. GELATT, M. J. SMOLEN, C. W. MATSON, R. L. HONEYCUTT, J. C. PATTON, and J. W. BICKHAM.
  2009. Assessing substitution patterns, rates, and homoplasy at HVRI of Steller sea lions, Eumetopias jubatus. Mol. Ecol. 18:3379-3393.

PINTO de Sá ALVES, L. C., A. ANDRIOLO, A. N. ZERBINI, J. L. ALTMAYER PIZZORNO, and P. J. CLAPHAM.
  2009. Record of feeding by humpback whales (Megaptera novaengliae) in tropical waters off Brazil. Mar Mammal Sci. 25(2):416-419.

REA, L. D., M. BERMAN-KOWALEWSKI, D. A. S. ROSEN, and A. W. TRITES.
  2009. Seasonal differences in biochemical adaptation to fasting in juvenile and subadult Steller sea lions (Eumetopias jubatus). Physiol. Biochem. Zool. 82:236-247.

REESE, C., N. HILLGRUBER, M. STURDEVANT, A. WERTHEIMER, W. SMOKER, and R. FOCHT.
  2009. Spatial and temporal distribution and the potential for estuarine interactions between wild and hatchery chum salmon (Oncorhynchus keta) in Taku Inlet, Alaska. Fish. Bull., U.S. 107:433-450.  Online. (.pdf, 720 KB).

REGAN, T., B. TAYLOR, G. THOMPSON, J. COCHRANE, R. MERRICK, M. NAMMACK, S. RUMSEY, K. RALLS, and M. RUNGE.
  2009. Developing a structure for quantitative listing criteria for the U.S. Endangered Species Act using performance testing: Phase 1 report. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-SWFSC-437, 166 p.  Online. (.pdf, 2.19 MB).

RESSLER, P. H., G. W. FLEISCHER, V. G. WESPESTAD, and J. HARMS.
  2009. Developing a commercial-vessel-based stock assessment survey methodology for monitoring the U.S. West Coast widow rockfish (Sebastes entomelas) stock. Fish. Res. 99:63-73.

RICK, T. C., R. L. DELONG, J. M. ERLANDSON, T. J. BRAJE, T. L. JONES, D. J. KENNETT, T. A. WAKE, and P. L. WALKER.
  2009. A trans-Holocene archaeological record of Guadalupe fur seals (Arctocephalus townsendi) on the California coast. Mar. Mammal Sci. 25:487-502.

ROOPER, C. N., and M. H. MARTIN.
  2009. Predicting presence and abundance of demersal fishes: a model application to shortspine thornyhead Sebastolobus alascanus. Mar. Ecol. Prog. Ser. 379:253-266.  Online. (.pdf, 583 KB).

SCHMIDT, J. H., M. S. LINDBERG, D. S. JOHNSON, B. CONANT, and J. KING.
  2009. Evidence of Alaskan trumpeter swan population growth using Bayesian hierarchical models. J. Wildl. Manage. 73:720-727.

SCHMIDT, J. H., M. S. LINDBERG, D. S. JOHNSON, and J. A. SCHMUTZ.
  2009. Environmental and human influences on trumpeter swan habitat occupancy in Alaska. Condor 111:266-275.

SEPEZ, J.
  2009. North Pacific region, p. 13-17. In Fishing Communities of the United States 2006. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-F/SPO-98.

SEUNG, C. K., and E. C. WATERS.
  2009. Measuring the economic linkage of Alaska fisheries: a supply-driven social accounting matrix (SDSAM) approach. Fish. Res. 97:17-23.

SEWALL, F. F., and C. J. RODGVELLER.
  2009. Changes in body composition and fatty acid profile during embryogenesis of quillback rockfish (Sebastes maliger). Fish. Bull., U.S. 107:207-220.  Online. (.pdf, 353 KB).

SHEN, H., M. W. DORN, V. WESPESTAD, and T. J. QUINN.
  2009. Schooling pattern of eastern Bering Sea walleye pollock and its effect on fishing behaviour. ICES J. Mar. Sci. 66:1284-1288.

SIGLER, M. F., D. J. TOLLIT, J. J. VOLLENWEIDER, J. F. THEDINGA, D. J. CSEPP, J. N. WOMBLE, M. WONG, M. J. REHBERG, and A. W. TRITES.
  2009. Steller sea lion foraging response to seasonal changes in prey availability. Mar. Ecol. Prog. Ser. 388:243-261.  Online. (.pdf, 474 KB).

SOHN, R. L., P. HUANG, G. KAWAHARA, M. MITCHELL, J. GUYON, R. KALLURI, L. M. KUNKEL, and E. GUSSONI.
  2009. A role for nephrin, a renal protein, in vertebrate skeletal muscle cell fusion. Proc. Natl. Acad. Sci., U.S. 106:9274-9.

SPRINGMAN, K. R., J. SHORT, and S. D. RICE.
  2009. Response to letter to the editor by P.D. Boehm, D.S. Page, and J.M. Neff. Mar. Environ. Res. 67:259-261.

STEVENSON, D. E., C. KENALEY, and N. RARING.
  2009. First records of rare mesopelagic fishes from the Gulf of Alaska. Northwest. Nat. 90:24-34.

STEVENSON, D. E., and B. A. SHEIKO.
  2009. Clarification of the Lycodes diapterus species complex (Perciformes: Zoarcidae), with comments on the subgenus Furcimanus. Copeia 2009:125-137.

STONER, A. W.
  2009. Prediction of discard mortality for Alaskan crabs after exposure to freezing temperatures, based on a reflex impairment index. Fish. Bull., U.S. 107:451-463.  Online. (.pdf, 348 KB).

STRAM, D. L., and J. N. IANELLI.
  2009. Eastern Bering Sea pollock trawl fisheries: Variation in salmon bycatch over time and space, p. 827-850. In C. C. Krueger and C. E. Zimmerman (editors), Pacific Salmon: Ecology and Management in Western Alaska's Populations. Am. Fish. Soc. Symp. 70. Bethesda, Maryland.

STURDEVANT, M. V., M. F. SIGLER, and J. A. ORSI.
  2009. Sablefish predation on juvenile Pacific salmon in the coastal marine waters of Southeast Alaska in 1999. Trans. Am. Fish. Soc. 138:675-691.

TAYLOR, M. K., J. LAAKE, P. D. McLOUGHLIN, H. D. CLUFF, and F. MESSIER.
  2009. Demography and population viability of polar bears in the Gulf of Boothia, Nunavut. Mar. Mammal Sci. 25(4):778-796.

THROWER, F. P., and J. J. HARD.
  2009. Effects of a single event of close interbreeding on growth and survival in steelhead. Conserv. Genet. 10:299-1307.

TOLLIT, D., A. D. SCHULZE, A. W. TRITES, P. F. OLESIUK, S. J. CROCKFORD, T. GELATT, R. R. REAM, and K. M. MILLER.
  2009. Development and application of DNA techniques for validating and improving pinniped diet estimates. Ecol. Appl. 19:889-905.

TRUDEL, M., J. FISHER, J. A. ORSI, J. F. T. MORRIS, M. E. THIESS, R. M. SWEETING, S. HINTON, E. A. FERGUSSON, and D. W. WELCH.
  2009. Distribution and migration of juvenile Chinook salmon derived from coded wire tag recoveries along the continental shelf of western North America. Trans. Am. Fish. Soc. 138:1369-1391.

TUCKER, S., M. TRUDEL, D. W. WELCH, J. R. CANDY, J. F. T. MORRIS, M. E. THIESS, C. WALLACE, D. J. TEEL, W. CRAWFORD. E. V. FARLEY, and T. D. BEACHAM.
  2009. Seasonal stock-specific migrations of juvenile sockeye salmon along the West Coast of North America: Implications for growth. Trans. Amer. Fish. Soc. 138:1458-1480.

VACCARO, I., L. ZANOTTI, and J. SEPEZ.
  2009. Commons and markets: Opportunities for development of local sustainability. Environ. Politics 18:522-538.

VASSILAKOS, D., A. NATOLI, M. DAHLHEIM, and A. R. HOELZEL.
  2009. Balancing and directional selection at exon-2 of the MHC DQB1 locus among populations of odontocete cetaceans. Mol. Biol. Evol. 26:681-689.

von SZALAY, P. G., and D. A. SOMERTON.
  2009. A comparison of acoustic backscatter between a trawling and a free-running vessel for eastern Bering Sea walleye pollock (Theragra chalcogramma). Fish. Res. 96:223-229.

WADE, P. R.
  2009. Population dynamics, p.913-918. In W. F. Perrin, B. Wursig, and J. G. M. Thewissen (editors), Encyclopedia of Marine Mammals, 2nd edition. Academic Press, San Diego.

WADE, P. R., J. M. Ver HOEF, and D. P. DeMASTER.
  2009. Mammal-eating killer whales and their prey-trend data for pinnipeds and sea otters in the North Pacific Ocean do not support the sequential megafaunal collapse hypothesis. Mar. Mammal Sci. 25(3):737-747.

WEINGARTNER, T., L. EISNER, G. L. ECKERT, and S. DANIELSON.
  2009. Southeast Alaska: Oceanographic habitats and linkages. J. Biogeogr. 36:387-400.

WEST, K. L., W. A. WALKER, R. W. BAIRD, W. WHITE, G. LEVINE, E. BROWN, and D. SCHOFIELD.
  2009. Diet of pygmy sperm whales (Kogia breviceps) in the Hawaiian Archipelago. Mar. Mammal Sci. 25(4):931-943.

WILDERBUER, T. K., and B. J. TURNOCK.
  2009. Sex-specific natural mortality of arrowtooth flounder in Alaska: Implications of a skewed sex ratio on exploitation and management. North Am. J. Fish. Manage. 29:306-322.

WILSON, M. T.
  2009. Ecology of small neritic fishes in the western Gulf of Alaska. I. Geographic distribution in relation to prey density and the physical environment. Mar. Ecol. Prog. Ser. 392:223-237.  Online. (.pdf, 947 KB).

WILSON, M. T., C. M. JUMP, and A. BUCHHEISTER.
  2009. Ecology of small neritic fishes in the western Gulf of Alaska. II. Consumption of krill in relation to krill standing stock and the physical environment. Mar. Ecol. Prog. Ser. 392:239-251.  Online. (.pdf, 765 KB).

WINTER, A., R. J. FOY, and K. WYNNE.
  2009. Seasonal differences in prey availability around a Steller sea lion haulout and rookery in the Gulf of Alaska. Aquat. Mammals 35:145-162.

WOMBLE, J. N., M. F. SIGLER, and M. F. WILLSON.
  2009. Linking seasonal distribution patterns with prey availability in a central-place forager, the Steller sea lion. J. Biogeogr. 36:1-11.

YOCHEM P. K., B. S. STEWART, T. S. GELATT, and D. B. SINIFF.
  2009. Health assessment of Weddell seals, Leptonychotes weddellii, in McMurdo Sound, Antarctica, p. 123-138. In K. R. Kerry and M. J. Riddle (editors), Health of Antarctic Wildlife: a Challenge for Science and Policy. Springer Verlag. Berlin.

ZIMMERMANN, M., C. B. DEW, and B. A. MALLEY.
  2009. History of Alaska red king crab, Paralithodes camtschaticus, bottom trawl surveys, 1940-61. Mar. Fish. Rev. 71(1):1-22.  Online. (.pdf, 4.58MB).  Supporting material.


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