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ABLE, K. W., and J. T. DUFFY-ANDERSON.
  2006. Impacts of piers on juvenile fishes in the lower Hudson River, p. 428-440. In J. S. Levinton and J. R. Walman (editors), The Hudson River estuary. Cambridge University Press, New York, NY.

ABOOKIRE, A. A.
  2006. Reproductive biology, spawning season, and growth of female rex sole (Glyptocephalus zachirus) in the Gulf of Alaska. Fish. Bull., U.S. 104:350-359.  Online. (.pdf, 1.12MB).

ACEVEDO-WHITEHOUSE, K., T. R. SPRAKER, E. LYONS, S. R. MELIN, F. GULLAND, R. L. DELONG, and W. AMOS.
  2006. Contrasting effects of heterozygosity on survival and hookworm resistance in California sea lion pups. Mol. Ecol. 15:1973-1982.

AGOSTINI, V. N., R. C. FRANCIS, A. B. HOLLOWED, S. D. PIERCE, C. WILSON, and A. N. HENDRIX.
  2006. The relationship between Pacific hake (Merluccius productus) distribution and poleward subsurface flow in the California Current System. Can. J. Fish. Aquat. Sci. 63:2648-2659.

BALLANCE, L. T., R. L. PITMAN, R. P. HEWITT, D. B. SINIFF, W. Z. TRIVELPIECE, P. J. CLAPHAM, and R. L. BROWNELL, Jr.
  2006. The removal of large whales from the Southern Ocean: Evidence for long-term ecosystem effects? Pages 215-230. In J. A. Estes, D. P. DeMaster, D. F. Doak, T. M. Williams, and R. L. Brownell, Jr. (editors), Whales, Whaling, and Ocean Ecosystems. Univ. California Press, Berkeley.

BORCHERS, D. L., J. L. LAAKE, C. SOUTHWELL, and C. G. M. PAXTON.
  2006. Accommodating unmodeled heterogeneity in double-observer distance sampling surveys. Biometrics 62:72-378.

BOWEN, L., B. ALDRIDGE, K. BECKMEN, T. GELATT, L. REA, K. BUREK, K. PITCHER, and J. L. STOTT.
  2006. Differential expression of immune response genes in Steller sea lions (Eumetopias jubatus): an indicator of ecosystem health? Ecohealth 3(2):109-113.

BOWEN, L., B. M. ALDRIDGE, R. DELONG, S. MELIN, C. GODINEZ, A. ZAVALA, F. GULLAND, L. LOWENSTINE, J. L. STOTT, and M. L. JOHNSON.
  2006. MHC gene configuration variation in geographically disparate populations of California sea lions (Zalophus californianus). Mol. Ecol. 15:529-533.

BRADFORD, A. L., P. R. WADE, D. W. WELLER, A. M. BURDIN, Y. V. IVASHCHENKO, G. A. TSIDULKO, G. R. VanBLARICOM, and R. L. BROWNELL, Jr.
  2006. Survival estimates of western gray whales Eschrichtius robustus incorporating individual heterogeneity and temporary emigration. Mar. Ecol. Prog. Ser. 315:293-307.  Online. (.pdf, 512KB).

BRANCH, T. A., R. HILBORN, A. C. HAYNIE, G. FAY, L. FLYNN, J. GRIFFITHS, K. N. MARSHALL, J. K. RANDALL, J. M. SCHEUERELL, E. J. WARD, and M. YOUNG.
  2006. Fleet dynamics and fishermen behavior: Lessons for fisheries managers. Can. J. Fish. Aquat. Sci. 63:1647-1668.

BRANDON, J., and P. R. WADE.
  2006. A stock assessment of the Bering-Chukchi-Beaufort Seas stock of bowhead whales using Bayesian model averaging. J. Cetacean Res. Manage. 8(3):225-239.

BUCHHEISTER, A., M. T. WILSON, R. J. FOY, and D. A. BEAUCHAMP.
  2006. Seasonal and geographic variation in condition of juvenile walleye pollock in the western Gulf of Alaska. Trans. Am. Fish. Soc. 135:897–907.

BUSBY, M. S., J. W. ORR, and D. M. BLOOD.
  2006. Eggs and late-stage embryos of Allocareproctus unangas (family Liparidae) from the Aleutian Islands. Ichthyol. Res. 53:423–426.

BUSBY, M. S., and R. L. CARTWRIGHT.
  2006. Redescription of Paraliparis holomelas Gilbert, 1896 (Teleostei: Liparidae), with a description of early life history stages. Ichthyol. Res.53:369–378.

CARLS, M. G.
  2006. Nonparametric identification of petrogenic and pyrogenic hydrocarbons in aquatic ecosystems. Environ. Sci. Technol. 40:4233-4239.

CARLS, M. G., J. W. SHORT, and J. PAYNE.
  2006. Accumulation of polycyclic aromatic hydrocarbons by Neocalanus copepods in Port Valdez, Alaska. Mar. Pollut. Bull. 52:1480-1489.

CARRETTA, J. V., K. A. FORNEY, M. M. MUTO, J. BARLOW, J. BAKER, B. HANSON, and M. S. LOWRY.
  2006. U.S. Pacific marine mammal stock assessments: 2005. U.S. Dep. Commer., NOAA Tech. Memo., NMFS-SWFSC-388, 317 p.  Online. (.pdf 5.2MB).

CLAPHAM, P. J., and J. S. LINK.
  2006. Whales, whaling, and ecosystems in the North Atlantic Ocean, p. 314-323. In J. A. Estes, D. P. DeMaster, D. F. Doak, T. M. Williams, and R. L. Brownell, Jr. (editors), Whales, Whaling, and Ocean Ecosystems. Univ. California Press, Berkeley.

COX, T. M., T. J. RAGEN, A. J. READ, E. VOS, R. W. BAIRD, K. BALCOMB, J. BARLOW, J. CALDWELL, T. CRANFORD, L. CRUM, A. D'AMICO, G. D'SPAIN, A. FERNANDEZ, J. FINNERAN, R. GENTRY, W. GERTH, F. GULLAND, H. HILDEBRAND, D. HOUSER, T. HULLAR, P. D. JEPSON, D. KETTEN, C. D. MACLEOD, P. MILLER, S. MOORE, D. C. MOUNTAIN, D. PALKA, P. PONGANIS, S. ROMMEL, T. ROWLES, B. TAYLOR, P. TYACK, D. WARTZOK, R. GISINER, J. MEAD, and L. BENNER.
  2006. Understanding the impacts of anthropogenic sound on beaked whales. J. Cetacean Res. Manage. 7:177-187.

CROLL, D. A., D. A. DEMER, R. P. HEWITT, J. K. JANSEN, M. E. GOEBEL, and B. R. TERSHY.
  2006. Effects of variability in prey abundance on reproduction and foraging in chinstrap penguins (Pygoscelis antarctica). J. Zool. (London):269:506-513.

CSEPP, D. J., and D. E. STEVENSON.
  2006. Morphology of the bigmouth manefish (Caristius macropus) from the eastern North Pacific. Northwest. Nat. 87:247-252.

DAVIS, M. W., and M. L. OTTMAR.
  2006. Wounding and reflex impairment may be predictors for mortality in discarded or escaped fish. Fish. Res. 82:1-6.

DAVIS, M. W., M. L. SPENCER, and M. L. OTTMAR.
  2006. Behavioral responses to food odor in juvenile marine fish: Acuity varies with species and fish length. J. Exp. Mar. Biol. Ecol. 328:1-9.

DAVIS, R. W., E. A. A. BRANDON, D. G. CALKINS, and T. R. LOUGHLIN.
  2006. Female attendance and neonatal pup growth in Steller sea lions (Eumetopias jubatus), p. 13-29. In A. W. Trites, S. K. Atkinson, D. P. DeMaster, L. W. Fritz, T. S. Gelatt, L. D. Rea, and K. M. Wynne (editors), Sea lions of the world. Alaska Sea Grant Program Report AK-SG-06-01, University of Alaska, Fairbanks.

De FOREST, L. G., and M. S. BUSBY.
  2006. Development of larval and early juvenile penpoint gunnel (Apodichthys flavidus) (family: Pholidae). Fish. Bull., U.S. 104:476-481.  Online. (.pdf, 618KB).

De ROBERTIS, A., and C. D. WILSON.
  2006. Walleye pollock respond to trawling vessels. ICES J. Mar. Sci. 63:514-522.

DeMASTER, D. P., A. W. TRITES, P. CLAPHAM, S. MIZROCH, P. WADE, R. J. SMALL, and J. Ver HOEF.
  2006. The sequential megafaunal collapse hypothesis: Testing with existing data. Prog. Oceangr. 68:329-342.

DUFFY-ANDERSON, J. T., M. S. BUSBY, K. L. MIER, C. M. DELIYANIDES, and P. J. STABENO.
  2006. Spatial and temporal patterns in summer ichthyoplankton assemblages on the eastern Bering Sea shelf 1996–2000. Fish. Oceanogr. 15:80–94.

DURBAN, J. W., and K. M. PARSONS.
  2006. Laser-metrics of free-ranging killer whales. Mar. Mammal Sci. 22(3):735-743.

EILER, J. H., T. R. SPENCER, J. J. PELLA, and M. M. MASUDA.
  2006. Stock composition, run timing, and movement patterns of Chinook salmon returning to the Yukon River basin in 2004. U.S. Dep. Commer., NOAA Tech. Memo., NMFS-AFSC-165, 107 p.  Online (.pdf, 5.43MB).

EILER, J. H., T. R. SPENCER, J. J. PELLA, and M. M. MASUDA.
  2006. Stock composition, run timing, and movement patterns of Chinook salmon returning to the Yukon River basin in 2003. U.S. Dep. Commer., NOAA Tech. Memo., NMFS-AFSC-163, 104 p.  Online (.pdf, 4.41MB).

ESTES, J. A., D. P. DeMASTER, R. L. BROWNELL, Jr., D. F. DOAK, and T. M. WILLIAMS.
  2006. Retrospection and review, p. 388-393. In J. A. Estes, D. P. DeMaster, D. F. Doak, T. M. Williams, and R. L. Brownell, Jr. (editors), Whales, Whaling, and Ocean Ecosystems. Univ. California Press, Berkeley.

ESTES, J. A., D. P. DeMASTER, D. F. DOAK, T. M. WILLIAMS, and R. L. BROWNELL, Jr. (editors).
  2006. Whales, whaling, and ocean ecosystems. Univ. California Press, Berkeley. 418 p.

EVSEENKO, S. A., B. LAUREL, J. A. BROWN, and D. Yu MALIKOVA.
  2006. On the Gadus taxonomy: Ontogenetic evidence. J. Ichthyol. 46:351-358.

FIELD, J. C., R. C. FRANCIS, and K. AYDIN.
  2006. Top-down modeling and bottom-up dynamics: Linking a fisheries-based ecosystem model with climate hypotheses in the Northern California Current. Prog. Oceanogr. 68:238–270.

FROST, K. J., M. A. SIMPKINS, R. J. SMALL, and L. F. LOWRY.
  2006. Development of diving by harbor seal pups in two regions of Alaska: Use of the water column. Mar. Mammal Sci. 22(3):617-643.

FUJIOKA, J. T.
  2006. A model for evaluating fishing impacts on habitat and comparing fishing closure strategies. Can. J. Fish. Aquat. Sci. 63:2330-2342.

GENDE, S. M., and M. F. SIGLER.
  2006. Persistence of forage fish ‘hot spots’ and its association with foraging Steller sea lions (Eumetopias jubatus) in southeast Alaska. Deep Sea Res. II 53:432-441.

GENDE, S. M., and M. F. SIGLER.
  2006. Predictability of prey available to Steller sea lions in southeastern Alaska, p. 69-81. In A. W. Trites, S. K. Atkinson, D. P. DeMaster, L. W. Fritz, T. S. Gelatt, L. D. Rea, and K. M. Wynne (editors), Sea lions of the world. Alaska Sea Grant Program Report AK-SG-06-01, University of Alaska, Fairbanks.

GHARRETT, A. J., C. W. MECKLENBURG, L. W. SEEB, Z. LI, A. P. MATALA, A. K. GRAY, and J. HEIFETZ.
  2006. Do genetically distinct rougheye rockfish sibling species differ phenotypically? Trans. Am. Fish. Soc. 135:792–800.

GRAY, A. K., A. W. KENDALL, Jr., B. L. WING, M. G. CARLS, J. HEIFETZ, Z. LI, and A. J. GHARRETT.
  2006. Identification and first documentation of larval rockfishes in the southeast Alaskan waters was possible using mitochondrial markers but not pigmentation patterns. Trans. Am. Fish. Soc. 135:1-11.

GREBMEIER, J. M., J. E. OVERLAND, S. E. MOORE, E. V. FARLEY, E. C. CARMACK, L. W. COOPER, K. E. FREY, J. H. HELLE, F. A. McLAUGHLIN, and S. L. McNUTT.
  2006. A major ecosystem shift in the northern Bering Sea. Science 311(5766):1461-1464.

GREGG, J. L., D. M. ANDERL, and D. K. KIMURA.
  2006. Improving the precision of otolith-based age estimates for Greenland halibut (Reinhardtius hippoglossoides) with preparation methods adapted for fragile sagittae. Fish. Bull., U.S. 104:643-648.  Online. (.pdf, 1.02MB).

GUDMUNDSON, C. J., T. K. ZEPPELIN, and R. R. REAM.
  2006. Application of two methods for determining diet of northern fur seals (Callorhinus ursinus). Fish. Bull., U.S. 104:445-455.  Online. (.pdf, 859KB).

HEINTZ, R., M. M. KRAHN, G. M. YLITALO, and F. MORADO.
  2006. Organochlorines in walleye pollock from the Bering Sea and southeastern Alaska, p. 561-580. In A. W. Trites, S. K. Atkinson, D. P. DeMaster, L. W. Fritz, T. S. Gelatt, L. D. Rea and K. M. Wynne (editors), Sea lions of the world. Alaska Sea Grant Program Report AK-SG-06-01, University of Alaska, Fairbanks.

HOFF, G. R.
  2006. Biodiversity as an index of regime shift in the eastern Bering Sea. Fish. Bull., U.S. 104:226–237.  Online. (.pdf, 1.27MB).

HOFFMAN, J. I., C. W. WATSON, W. AMOS, T. R. LOUGHLIN, and J. W. BICKHAM.
  2006. Deep genetic subdivision within a continuously distributed and highly vagile marine mammal, the Steller's sea lion (Eumetopias jubatus). Mol. Ecol. 15:2821-2832.

HULBERT, L. B., M. F. SIGLER, and C. R. LUNSFORD.
  2006. Depth and movement behaviour of the Pacific sleeper shark in the north-east Pacific Ocean. J. Fish Biol. 69:406-425.

HURST, T. P., and A. A. ABOOKIRE.
  2006. Temporal and spatial variation in potential and realized growth rates of age-0 northern rock sole. J. Fish Biol. 68:905-919.

IGNELL, S. E., B. L. WING, B. D. EBBERTS, and M. M. MASUDA.
  2006. Abundance and spatial pattern of salps within the North Pacific Subarctic Frontal Zone, August 1991, U.S. Dep. Commer., NOAA Tech. Memo., NMFS-AFSC-162, 26 p.  Online (.pdf, 1.79MB).

JOY, R., D. J. TOLLIT, J. L. LAAKE, and A. W. TRITES.
  2006. Using simulations to evaluate reconstructions of Sea lion diet from scat, p. 205-221. In A. W. Trites, S. K. Atkinson, D. P. DeMaster, L. W. Fritz, T. S. Gelatt, L. D. Rea and K. M. Wynne (editors), Sea lions of the world. Alaska Sea Grant Program Report AK-SG-06-01, University of Alaska, Fairbanks.

KASTELLE, C. R., and D. K. KIMURA.
  2006. Age validation of walleye pollock (Theragra chalcogramma) from the Gulf of Alaska using the disequilibrium of Pb-210 and Ra-226. ICES J. Mar. Sci. 63:1520-1529.

KENALEY, C. P., and J. W. ORR.
  2006. Rouleina attrita (Osmeriformes: Alepocephalidae): New records for the eastern North Pacific and Bering Sea. Ichthyol. Res. 53:200-202.

KIMURA, D. K., and M. W. DORN.
  2006. Parameterizing probabilities for estimating age-composition distributions for mixture models. Fish. Bull., U.S. 104:303-305.  Online. (.pdf, 141KB).

KIMURA, D. K., and D. A. SOMERTON.
  2006. Review of statistical aspects of survey sampling for marine fisheries. Rev. Fish. Sci. 14:245-283.

KIMURA, D. K., C. R. KASTELLE, B. J. GOETZ, C. M. GBURSKI, and A. V. BUSLOV.
  2006. Corroborating the ages of walleye pollock (Theragra chalcogramma). Mar. Freshwater Res. 57:323–332.

KOSKI, W. R., D. J. RUGH, A. E. PUNT, and D. J. ZEH.
  2006. An approach to minimise bias in estimation of the length-frequency distribution of bowhead whales (Balaena mysticetus) from aerial photogrammetric data. J. Cetacean Res. Manage. 8:45-54.

KOTWICKI, S., K. L. WEINBERG, and D. A. SOMERTON.
  2006. The effect of autotrawl systems on the performance of a survey trawl. Fish. Bull., U.S. 104:35-45.  Online. (.pdf, 970KB).

LAAKE, J., and E. REXSTAD.
  2006. RMark – an alternative approach to building linear models in MARK. (Appendix C). In E. Cooch and G. White (editors), Program MARK: a gentle introduction, 2nd ed. [Online]. Available at (http://www.phidot.org/software/mark/docs/book/pdf/app_3.pdf). (.pdf, 449KB).

LANG WESSEL, M., W. W. SMOKER, and J. E. JOYCE.
  2006. Variation of morphology among juvenile Chinook salmon of hatchery, hybrid, and wild origin. Trans. Am. Fish. Soc. 135:333-340.

LAUREL, B. J., and I. R. BRADBURY.
  2006. “Big” concerns with high latitude marine protected areas (MPAs): Trends in connectivity and MPA size. Can. J. Fish. Aquat. Sci. 63:2603-2607.

LAUREL, B. J., and J. A. BROWN.
  2006. Influence of cruising and ambush predators on 3-dimensional habitat use in age 0 juvenile Atlantic cod Gadus morhua. J. Exp. Mar. Biol. Ecol. 329:34-46.

LEHNERT, H., R. STONE, and W. HEIMLER.
  2006. New species of deep-sea demosponges (Porifera) from the Aleutian Islands (Alaska, USA). Zootaxa 1250:1-35.

LEHNERT, H., R. STONE, and W. HEIMLER.
  2006. New species of Poecilosclerida (Demospongiae, Porifera) from the Aleutian Islands, Alaska, USA. Zootaxa 1155:1-23.

LEHNERT, H., R. STONE, and W. HEIMLER.
  2006. Erylus aleuticus sp. nov. (Porifera: Demospongiae: Astrophorida: Geodiidae) from the Aleutian Islands, Alaska, USA. J. Mar. Biol. Assoc. U.K. 86:971-975.

LEMKE, J. L., and C. H. RYER.
  2006. Risk sensitivity in three juvenile (age-0) flatfish species: Does estuarine dependence promote risk-prone behavior? J. Exp. Mar. Biol. Ecol. 333:172-180.

LEMKE, J. L., and C. H. RYER.
  2006. Relative predation vulnerability of three juvenile (age-0) North Pacific flatfish species: Possible influence of nursery-specific predation pressures. Mar. Ecol. Prog. Ser. 328:267-273.  Online. (.pdf, 149KB).

LI, Z., A. K. GRAY, M. S.LOVE, T. ASAHIDA, and A. J. GHARRETT.
  2006. Phylogeny of members of the rockfish (Sebastes) subgenus Pteropodus and their relatives. Can. J. Zool. 84:527-536.

LITZOW, M. A.
  2006. Climate regime shifts and community reorganization in the Gulf of Alaska: How do recent shifts compare with 1976/1977? ICES J. Mar. Sci. 63:1386-1396.

LITZOW, M. A., K. M. BAILEY, F. G. PRAHL, and R. A. HEINTZ.
  2006. Climate regime shifts and reorganization of fish communities: the essential fatty acid limitation hypothesis. Mar. Ecol. Prog. Ser. 315:1-11.  Online. (.pdf, 374KB).

LUPES, S. C., M. W. DAVIS, B. L. OLLA, and C. B. SCHRECK.
  2006. Capture-related stressors impair immune system function in sablefish. Trans. Am. Fish. Soc. 135:129-138.

LUSSEAU, D., B. WILSON, P. S. HAMMOND, K. GRELLIER, J. W. DURBAN, K. M. PARSONS, T. R. BARTON, and P. M. THOMPSON.
  2006. Quantifying the influence of sociality on population structure in bottlenose dolphins. J. Anim. Ecol. 75:14-24.

McKELVEY, D. R., and C. D. WILSON.
  2006. Discriminant classification of fish and zooplankton backscattering at 38 and 120 kHz. Trans. Am. Fish. Soc. 135:488–499.

MENEZES, G. M., M. F. SIGLER, H. M. SILVA, and M. R. PINHO.
  2006. Structure and zonation of demersal and deep-water fish assemblages off the Azores Archipelago (mid-Atlantic). Mar. Ecol. Prog. Ser. 324:241-260.  Online. (.pdf, 1.88MB).

MILSTON, R. H., M. W. DAVIS, S. J. PARKER, B. L. OLLA, S. CLEMENTS, and C. B. SCHRECK.
  2006. Characterization of the physiological stress response in lingcod. Trans. Am. Fish. Soc. 135:1165-1174.

MIZROCH, S. A., and D. W. RICE.
  2006. Have North Pacific killer whales switched prey species in response to depletion of the great whale populations? Mar. Ecol. Prog. Ser. 310:235-246.

MOLES, A., L. HOLLAND, and O. ANDERSSON.
  2006. Assessment of the significance of direct and indirect pollution inputs to a salmon-producing river using polyethylene membrane devices. Environ. Toxicol. Chem. 25:2011-2017.

MOORE, S. E., and K. L. LAIDRE.
  2006. Trends in sea ice cover within habitats used by bowhead whales in the western Arctic. Ecol. Appl. 16(3):932-944.

MOORE, S. E., K. M. STAFFORD, D. K. MELLINGER, and J. A. HILDEBRAND.
  2006. Listening for large whales in the offshore waters of Alaska. Bioscience 56(1):49-55.

MORIN, P., R. G. LeDUC, K. M. ROBERTSON, N. M. HEDRICK, W. F. PERRIN, M. ETNIER, P. WADE, and B. L. TAYLOR.
  2006. Genetic analysis of killer whale (Orcinus orca) historical bone and tooth samples to identify western U.S. ecotypes. Mar. Mammal Sci. 22(4):897–909.

MUETER, F. J., and B. A. MEGREY.
  2006. Using multi-species surplus production models to estimate ecosystem-level maximum sustainable yields. Fish. Res. 81:189-201.

NICHOL, D. G., and E. A. CHILTON.
  2006. Recuperation and behaviour of Pacific cod after barotrauma. ICES J. Mar. Sci. 63:83-94.

O’CORRY-CROWE, G., B. L. TAYLOR, T. GELATT, T. R. LOUGHLIN, J. BICKHAM, M. BASTERRETCHE, K. W. PITCHER, and D. P. DeMASTER.
  2006. Demographic independence along ecosystem boundaries in Steller sea lions revealed by mtDNA analysis: Implications for management of an endangered species. Can. J. Zool. 84:1796-1809.

ORR, J. W., and M. S. BUSBY.
  2006. Revision of the snailfish genus Allocareproctus Pitruk & Fedorov (Teleostei: Liparidae), with descriptions of four new species from the Aleutian Islands. Zootaxa 1173:1–37.  Online. (.pdf, 530KB).

OTTO, R. S.
  2006. A review of worldwide fisheries for lithodid crabs (Decapoda: Anomura: Lithodidae) and their fluctuations, p. 167-185. In A. Asakura (editor), Biology of Anomura II. Crustacean Research, Special Number 6. Carcinological Society of Japan.

OTTO, R. S., and R. A. MacINTOSH.
  2006. Biology of the deep-water crab Paralomis spinosissima (Decapoda: Anomura: Lithodidae) near South Georgia Island, South Atlantic, p. 187-197. In A. Asakura (editor), Biology of Anomura II. Crustacean Research, Special Number 6. Carcinological Society of Japan.

PELLA, J., and M. MASUDA.
  2006. The Gibbs and split-merge sampler for population mixture analysis from genetic data with incomplete baselines. Can. J. Fish. Aquat. Sci. 63:576-596.

PENDLETON, G. W., K. W. PITCHER, L. W. FRITZ, A. E. YORK, K. L. RAUM-SURYAN, T. R. LOUGHLIN, D. G. CALKINS, K. K. HASTINGS, and T. S. GELATT.
  2006. Survival of Steller sea lions in Alaska: a comparison of increasing and decreasing populations. Can. J. Zool. 84:1163-1172.

PERSSELIN, S.
  2006. Cultivation of king crab larvae at the Kodiak Fisheries Research Center, Kodiak, Alaska, p. 9-13. In B. G. Stevens (editor), Alaska Crab Stock Enhancement and Rehabilitation: Workshop Proceedings. Alaska Sea Grant Program Report AK-SG-06-04, University of Alaska, Fairbanks, AK.

PEREZ, M. A.
  2006. Analysis of marine mammal bycatch data from the trawl, longline, and pot groundfish fisheries of Alaska, 1998-2004, defined by geographic area, gear type, and catch target groundfish species. U.S. Dep. Commer, NOAA Tech. Memo., NMFS-AFSC-167, 194 p.  Online (.pdf, 3.83MB).

PETRIE, M. E., and C. H. RYER.
  2006. Hunger, light level and body size affect refuge use by post-settlement lingcod Ophiodon elongatus. J. Fish Biol. 69:957-969.

PETRIE, M. E., and C. H. RYER.
  2006. Laboratory and field evidence for structural habitat affinity of young-of-the-year lingcod. Trans. Am. Fish. Soc. 135:1622-1630.

PFISTER, B., and D. P. DeMASTER.
  2006. Changes in marine mammal biomass in the Bering Sea/Aleutian Islands region before and after the period of commercial whaling, p. 116-133. In J. A. Estes, D. P. DeMaster, D. F. Doak, T. M. Williams, and R. L. Brownell, Jr. (editors), Whales, Whaling, and Ocean Ecosystems. Univ. California Press, Berkeley.

PIETSCH, T. W., and J. W. ORR.
  2006. Triglops dorothy, a new species of sculpin (Teleostei: Scorpaeniformes: Cottidae) from the southern Sea of Okhotsk. Fish. Bull., U.S. 104:238–246.  Online. (.pdf, 600KB).

PUNT, A. E., N. FRIDAY, and T. D. SMITH.
  2006. Reconciling data on the trends and abundance of North Atlantic humpback whales within a population modelling framework. J. Cetacean Res. Manage. 8:145-159.

REEVES, R. R., J. BERGER, and P. J. CLAPHAM.
  2006. Killer whales as predators of large baleen whales and sperm whales, p. 174-187. In J. A. Estes, D. P. DeMaster, D. F. Doak, T. M. Williams, and R. L. Brownell, Jr. (editors), Whales, Whaling, and Ocean Ecosystems. Univ. California Press, Berkeley.

REID, J. A., J. M. REID, M. ZIMMERMANN, C. JENKINS, S. J. WILLIAMS, and M. E. FIELD.
  2006. usSEABED: Pacific Coast (California, Oregon, Washington) offshore surficial-sediment data release, version1. U.S. Dep. Int., U.S. Geological Survey Data Series 182 [CD-ROM, .pdf], 57 p.  Online. (.pdf, 817 KB).

RICE, S., and A. MOLES.
  2006. Assessing the potential for remote delivery of persistent organic pollutants to the Kenai River in Alaska. Alaska Fish. Res. Bull. 12:153-157.  Online. (.pdf, 313 KB).

ROBBINS, J., J. M. ALLEN, P. J. CLAPHAM, and D. K. MATTILA.
  2006. Stock identity of a humpback whale taken in a southeastern Caribbean hunt. J. Cetacean Res. Manage. 8:29-31.

ROOPER, C. N., D. R. GUNDERSON, and D. A. ARMSTRONG.
  2006. Evidence for resource partitioning and competition in nursery estuaries by juvenile flatfish in Oregon and Washington. Fish. Bull., U.S. 104:616-622.  Online. (.pdf, 1.19 MB).

ROOPER, C. N., D. R. GUNDERSON, and B. M. HICKEY.
  2006. An examination of the feasibility of passive transport from coastal spawning grounds to estuarine nursery areas for English sole. Estuarine Coastal Shelf Sci. 68:609-618.

RYER, C. H., and L. A. K. BARNETT.
  2006. Influence of illumination and temperature upon flatfish reactivity and herding behavior: Potential implications for trawl capture efficiency. Fish. Res. 81:242-250.

SCHAUFLER, L., E. LOGERWELL, and J. VOLLENWEIDER.
  2006. Geographical variation in Steller sea lion prey quality in Alaska, p. 117-129. In A. W. Trites, S. K. Atkinson, D. P. DeMaster, L. W. Fritz, T. S. Gelatt, L. D. Rea, and K. M. Wynne (editors), Sea lions of the world. Alaska Sea Grant Program Report AK-SG-06-01, University of Alaska, Fairbanks.

SEPEZ, J., K. NORMAN, A. POOLE, and B. TILT.
  2006. Fish Scales: Scale and method in social science research for North Pacific and west coast fishing communities. Hum. Organ. 65:280-293.

SEUNG, C. K., and E. C. WATERS.
  2006. A Review of Regional Economic Models for Fisheries Management in the U.S.  Mar. Resour. Econ. 21(1):101-124.

SEUNG, C. K., and E. C. WATERS.
  2006. The role of the Alaska seafood industry: a social accounting matrix (SAM) model approach to economic base analysis. Ann. Reg. Sci. 40:335–350.

SHORT, J. A., C. M. GBURSKI, and D. K. KIMURA.
  2006. Using otolith morphometrics to separate small walleye pollock Theragra chalcogramma from Arctic cod Boreogadus saida in mixed samples. Alaska Fish. Res. Bull. 12:147-152.  Online. (.pdf, 340 KB).

SHORT, J. W., J. M. MASELKO, M. R. LINDEBERG, P. M. HARRIS, and S. D. RICE.
  2006. Vertical distribution and probability of encountering intertidal Exxon Valdez oil on shorelines of three embayments within Prince William Sound, Alaska. Environ. Sci. Technol. 40:3723-3729.

SIGLER, M. F., L. B. HULBERT, C. R. LUNSFORD, N. THOMPSON, K. BUREK, G. O’CORRY-CROWE, and A. C. HIRONS.
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SMALL, R. J., and D. P. DeMASTER.
  2006. Uncertain management or management of uncertainty: Steller sea lion—a case study, p. 521-534. In A. W. Trites, S. K. Atkinson, D. P. DeMaster, L. W. Fritz, T. S. Gelatt, L. D. Rea and K. M. Wynne (editors), Sea lions of the world. Alaska Sea Grant Program Report AK-SG-06-01, University of Alaska, Fairbanks.

SPIES, I. B., S. GAICHAS, D. E. STEVENSON, J. W. ORR, and M. F. CANINO.
  2006. DNA-based identification of Alaska skates (Amblyraja, Bathyraja and Raja:Rajidae) using cytochrome c oxidase subunit I (coI) variation. J. Fish Biol. 69 (Suppl. B):283–292.

STEVENS, B. G.
  2006. Embryo development and morphometry in the blue king crab Paralithodes platypus studied by using image and cluster analysis. J. Shellfish Res. 25:569-576.

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  2006. Alaska crab stock enhancement and rehabilitation: Workshop proceedings. Alaska Sea Grant Program Report AK-SG-06-04, University of Alaska, Fairbanks, AK. 89 p.

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 2006. Alaska crab stock enhancement and rehabilitation: an introduction, p.5-8. In B. G. Stevens (editor), Alaska Crab Stock Enhancement and Rehabilitation: Workshop Proceedings. Alaska Sea Grant Program Report AK-SG-06-04, University of Alaska, Fairbanks, AK.

STEVENS, B.
  2006. King crab cultivation and stock enhancement in Japan and the United States: a brief history, p. 23-31. In B. G. Stevens (editor), Alaska Crab Stock Enhancement and Rehabilitation: Workshop Proceedings. Alaska Sea Grant Program Report AK-SG-06-04, University of Alaska, Fairbanks, AK.

STEVENS, B.
  2006. Is it possible to enhance king crab populations in Alaska?, p. 79-89. In B. G. Stevens (editor), Alaska Crab Stock Enhancement and Rehabilitation: Workshop Proceedings. Alaska Sea Grant Program Report AK-SG-06-04, University of Alaska, Fairbanks, AK.

STEVENS, B. G.
  2006. Timing and duration of larval hatching for blue king crab Paralithodes platypus Brandt, 1850 held in the laboratory. J.Crustacean Biol. 26:495-502.

STEVENSON, D. E.
  2006. Stlegicottus xenogrammus Bolin, 1936 (Scorpaeniformes: Cottidae), a junior synonym of Rastrinus scutiger (Bean, 1890). Copeia 2006:792-796.

STEVENSON, D. E., and J. W. ORR.
  2006. A new species of Lycodes (Perciformes: Zoarcidae) from the Aleutian Islands. Copeia 2006(1):77-82.

STEVICK, P. T., J. ALLEN, P. J. CLAPHAM, S. K. KATONA, F. LARSEN, J. LIEN, D. K. MATTILA, P. J. PALSBŘLL, R. SEARS, J. SIGURJÓNSSON, T. D. SMITH, G. VIKINGSSON, N. ŘIEN, and P. S. HAMMOND.
  2006. Population spatial structuring on the feeding grounds in North Atlantic humpback whales (Megaptera novaeangliae). J. Zool., (London). 270:244–255.

STOCKHAUSEN, W., and V. GUIDA.
  2006. Chapter 9: Megabenthos – filterers, p. 47-52. In J. S. Link, C. A. Griswold, E. T. Methratta, and J. Gunnard (editors), Documentation for the Energy Modeling and Analysis eXercise (EMAX). U.S. Dep. Commer., NOAA, Natl. Mar. Fish. Serv., Northeast Fish. Sci. Cent. Ref. Doc. 06-15.

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  2006. Chapter 10: Megabenthos – other, p. 53-59. In J. S. Link, C. A. Griswold, E. T. Methratta, and J. Gunnard (editors), Documentation for the Energy Modeling and Analysis eXercise (EMAX). U.S. Dep. Commer., NOAA, Natl. Mar. Fish. Serv., Northeast Fish. Sci. Cent. Ref. Doc. 06-15.

STONE, R. P.
  2006. Coral habitat in the Aleutian Islands off Alaska: Depth distribution, fine-scale species associations, and fisheries interactions. Coral Reefs 25:229-238.

STONER, A. W., M. L. OTTMAR, and T. P. HURST.
  2006. Temperature affects activity and feeding motivation in Pacific halibut: Implications for bait-dependent fishing. Fish. Res. 81:202-209.

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  2006. Gray whale Eschrichtius robustus population and stock identity. Mammal Rev. 36(1):66-84.

TAYLOR, M. K., J. LAAKE, P. D. McLOUGHLIN, H. D. CLUFF, and F. MESSIER.
  2006. Demographic parameters and harvest-explicit population viability analysis for polar bears in M’Clintock Channel, Nunavut, Canada. J. Wildl. Manage. 70:1667-1673.

THEDINGA, J. F., S. W. JOHNSON, and D. J. CSEPP.
  2006. Nearshore fish assemblages in the vicinity of two Steller sea lion haul-outs in southeastern Alaska, p. 269-284. In A. W. Trites, S. K. Atkinson, D. P. DeMaster, L. W. Fritz, T. S. Gelatt, L. D. Rea and K. M. Wynne (editors), Sea lions of the world. Alaska Sea Grant Program Report AK-SG-06-01, University of Alaska, Fairbanks.

THEDINGA, J. F., S. W. JOHNSON, and D. G. MORTENSEN.
  2006. Habitat, age, and diet of a forage fish in southeastern Alaska: Pacific sandfish (Trichodon trichodon). Fish. Bull., U.S. 104:631-637.  Online. (.pdf, 1.26MB).

THROWER, F., and J. E. JOYCE.
  2006. The effects of stock and prerelease marine net-pen culture on the survival to adulthood, age at maturity, and fisheries contribution for three stocks of Chinook salmon in southeast Alaska. North Am. J. Aquacult. 68:317-323.

TOWELL, R. G., R. R. REAM, and A. E. YORK.
  2006. Decline in northern fur seal (Callorhinus ursinus) pup production on the Pribilof Islands. Mar. Mammal Sci. 22(2):486-491.

TRITES, A. W., S. K. ATKINSON, D. P. DeMASTER, L. W. FRITZ, T. S. GELATT, L. D. REA, and K. M. WYNNE (editors).
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  2006. Dietary and seasonal influences on blood chemistry and hematology in captive harbor seals. Mar. Mammal Sci. 22(1):104-123.

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  2006. Estimation of seasonal energy content of Steller sea lion (Eumetopias jubatus) diet, p. 155-176. In A. W. Trites, S. K. Atkinson, D. P. DeMaster, L. W. Fritz, T. S. Gelatt, L. D. Rea, and K. M. Wynne (editors), Sea lions of the world. Alaska Sea Grant Program Report AK-SG-06-01, University of Alaska, Fairbanks.

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  2006. Steller sea lion feeding habits in the Russian far east, 2000-2003, p. 223-234. In A. W. Trites, S. K. Atkinson, D. P. DeMaster, L. W. Fritz, T. S. Gelatt, L. D. Rea, and K. M. Wynne (editors), Sea Lions of the World. Alaska Sea Grant College Program Report AK-SG-06-01, University of Alaska, Fairbanks.

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  2006. Variation of morphology among juvenile Chinook salmon of hatchery, hybrid, and wild origin. Trans. Am. Fish. Soc. 135:333–340.

WESSEL, M. L., W. W. SMOKER, R. M. FAGEN, and J. E. JOYCE.
  2006. Variation of agonistic behavior among juvenile Chinook salmon (Oncorhynchus tshawytscha) of hatchery, hybrid, and wild origin. Can. J. Fish. Aquat. Sci. 63:438-447.

WILSON, M. T., C. M. JUMP, and J. T. DUFFY-ANDERSON.
  2006. Comparative analysis of the feeding ecology of two pelagic forage fishes: Capelin Mallotus villosus and walleye pollock Theragra chalcogramma. Mar. Ecol. Prog. Ser. 317:245-258.  Online. (.pdf, 1.17MB).

WING, B. L.
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  2006. Seasonal availability of abundant, energy-rich prey influences the abundance and diet of a marine predator, the Steller sea lion Eumetopias jubatus. Mar. Ecol. Prog. Ser. 325:281-293.  Online. (.pdf, 323KB).

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YANG, M-S., K. DODD, R. HIBPSHMAN, and A. WHITEHOUSE.
  2006. Food habits of groundfishes in the Gulf of Alaska in 1999 and 2001, 199 p. U.S. Dep. Commer., NOAA Tech. Memo., NMFS-AFSC-164, 199 p.  Online (.pdf, 1.43MB).

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  2006. Community structure of eastern Bering Sea invertebrates from summer bottom-trawl surveys 1982-2002. Mar. Ecol. Prog. Ser. 318:47-62.  Online. (.pdf, 1.46MB).

ZAGZEBSKI, K. A., F. M. D. GULLAND, M. HAULENA, M. E. LANDER, D. J. GREIG, L. J. GAGE, M. B. HANSON, P. K. YOCHEM, and B. S. STEWART.
  2006. Twenty-five years of rehabilitation of Odontocetes stranded in central and northern California, 1977 to 2002. Aquat. Mamm. 32:334-345.

ZARNKE, R. L., J. M. Ver HOEF, and R. A. DELONG.
  2006. Geographic pattern of serum antibody prevalence for Brucella spp. in caribou, grizzly bears, and wolves from Alaska, 1975-1998. J. Wildl. Dis. 42:570-577.

ZEPPELIN, T. K., and R. R. REAM.
  2006. Foraging habitats based on the diet of female northern fur seals (Callorhinus ursinus) on the Pribilof Islands, Alaska. J. Zool. (Lond.) 276:565-576.

ZERBINI, A. N., J. M. WAITE, J. L. LAAKE, and P. R. WADE.
  2006. Abundance, trends and distribution of baleen whales off western Alaska and the central Aleutian Islands. Deep-Sea Res. I 53(11):1772-1790.

ZHANG. C-I., and B. A. MEGREY.
  2006. A revised Alverson and Carney model for estimating the instantaneous rate of natural mortality. Trans. Am. Fish. Soc. 135:620–633.

ZIMMERMANN, M.
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